Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DOAP06340 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DOAP06340 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DOAP06340 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DOAP06340 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
HLA-DOAP06340 CD81-202ENST00000381036 880 ntTSL 3 BASIC19.7■□□□□ 0.74
HLA-DOAP06340 WRB-204ENST00000398753 699 ntTSL 3 BASIC19.7■□□□□ 0.74
HLA-DOAP06340 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DOAP06340 AC142381.1-201ENST00000426099 345 ntBASIC19.7■□□□□ 0.74
HLA-DOAP06340 BASP1P1-201ENST00000430708 665 ntBASIC19.7■□□□□ 0.74
HLA-DOAP06340 AC055876.3-201ENST00000431496 288 ntBASIC19.7■□□□□ 0.74
HLA-DOAP06340 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC19.7■□□□□ 0.74
HLA-DOAP06340 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC19.7■□□□□ 0.74
HLA-DOAP06340 PRYP6-201ENST00000514804 343 ntBASIC19.7■□□□□ 0.74
HLA-DOAP06340 AP002490.2-201ENST00000524791 560 ntBASIC19.7■□□□□ 0.74
HLA-DOAP06340 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.7■□□□□ 0.74
HLA-DOAP06340 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC19.7■□□□□ 0.74
HLA-DOAP06340 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC19.7■□□□□ 0.74
HLA-DOAP06340 AC073389.1-201ENST00000595595 795 ntBASIC19.7■□□□□ 0.74
HLA-DOAP06340 AC138649.4-201ENST00000612222 287 ntBASIC19.7■□□□□ 0.74
HLA-DOAP06340 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.7■□□□□ 0.74
HLA-DOAP06340 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DOAP06340 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DOAP06340 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.7■□□□□ 0.74
HLA-DOAP06340 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DOAP06340 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DOAP06340 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC19.7■□□□□ 0.74
HLA-DOAP06340 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.7■□□□□ 0.74
HLA-DOAP06340 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
HLA-DOAP06340 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 AL671710.1-201ENST00000610245 2349 ntBASIC19.69■□□□□ 0.74
HLA-DOAP06340 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
HLA-DOAP06340 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
HLA-DOAP06340 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
HLA-DOAP06340 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
HLA-DOAP06340 VMA21-202ENST00000370361 693 ntTSL 5 BASIC19.69■□□□□ 0.74
HLA-DOAP06340 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.69■□□□□ 0.74
HLA-DOAP06340 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.69■□□□□ 0.74
HLA-DOAP06340 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC19.69■□□□□ 0.74
HLA-DOAP06340 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC19.69■□□□□ 0.74
HLA-DOAP06340 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.69■□□□□ 0.74
HLA-DOAP06340 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC19.69■□□□□ 0.74
HLA-DOAP06340 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.69■□□□□ 0.74
HLA-DOAP06340 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.69■□□□□ 0.74
HLA-DOAP06340 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
HLA-DOAP06340 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 KRT8P39-201ENST00000396270 1433 ntBASIC19.68■□□□□ 0.74
HLA-DOAP06340 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DOAP06340 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DOAP06340 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DOAP06340 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DOAP06340 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DOAP06340 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DOAP06340 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 PCDHB17P-201ENST00000539533 2393 ntBASIC19.68■□□□□ 0.74
HLA-DOAP06340 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DOAP06340 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DOAP06340 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DOAP06340 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DOAP06340 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DOAP06340 CENPM-205ENST00000404067 905 ntTSL 3 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 PP14571-201ENST00000404327 934 ntTSL 2 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 INO80C-206ENST00000586489 594 ntTSL 3 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.68■□□□□ 0.74
HLA-DOAP06340 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
HLA-DOAP06340 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HLA-DOAP06340 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HLA-DOAP06340 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.67■□□□□ 0.74
HLA-DOAP06340 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC19.67■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms