Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 REEP1-209ENST00000541910 969 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 DET1-205ENST00000558413 583 ntTSL 4 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 CYGB-204ENST00000589342 815 ntTSL 3 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 AC026471.5-201ENST00000615068 467 ntBASIC12.69□□□□□ -0.38
HLA-DQA1P01909 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
HLA-DQA1P01909 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 AC138035.3-201ENST00000622706 2791 ntBASIC12.68□□□□□ -0.38
HLA-DQA1P01909 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 TSPY7P-201ENST00000431358 1114 ntBASIC12.68□□□□□ -0.38
HLA-DQA1P01909 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 SNORA78-201ENST00000459373 127 ntBASIC12.68□□□□□ -0.38
HLA-DQA1P01909 CA15P1-201ENST00000481698 905 ntBASIC12.68□□□□□ -0.38
HLA-DQA1P01909 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 NUDT16P1-203ENST00000513809 620 ntBASIC12.68□□□□□ -0.38
HLA-DQA1P01909 DHDH-203ENST00000522614 776 ntTSL 5 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 SLC25A1P4-201ENST00000567977 778 ntBASIC12.68□□□□□ -0.38
HLA-DQA1P01909 GRAP-204ENST00000573099 846 ntTSL 3 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 MIR4785-201ENST00000585005 73 ntBASIC12.68□□□□□ -0.38
HLA-DQA1P01909 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 Z99916.2-201ENST00000604037 246 ntBASIC12.68□□□□□ -0.38
HLA-DQA1P01909 AC112497.1-201ENST00000624824 639 ntBASIC12.68□□□□□ -0.38
HLA-DQA1P01909 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 AL645728.1-201ENST00000366221 2101 ntBASIC12.68□□□□□ -0.38
HLA-DQA1P01909 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 CICP13-201ENST00000422015 2789 ntBASIC12.68□□□□□ -0.38
HLA-DQA1P01909 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
HLA-DQA1P01909 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
HLA-DQA1P01909 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms