Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX3O95343 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC16.44■□□□□ 0.22
SIX3O95343 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.44■□□□□ 0.22
SIX3O95343 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC16.44■□□□□ 0.22
SIX3O95343 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX3O95343 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.44■□□□□ 0.22
SIX3O95343 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.44■□□□□ 0.22
SIX3O95343 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
SIX3O95343 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.44■□□□□ 0.22
SIX3O95343 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX3O95343 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.44■□□□□ 0.22
SIX3O95343 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 AC087163.2-201ENST00000457299 853 ntBASIC16.44■□□□□ 0.22
SIX3O95343 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.44■□□□□ 0.22
SIX3O95343 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX3O95343 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.44■□□□□ 0.22
SIX3O95343 AC025062.2-201ENST00000605477 670 ntBASIC16.44■□□□□ 0.22
SIX3O95343 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 AC012313.10-201ENST00000623509 926 ntBASIC16.44■□□□□ 0.22
SIX3O95343 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
SIX3O95343 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SIX3O95343 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.44■□□□□ 0.22
SIX3O95343 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.43■□□□□ 0.22
SIX3O95343 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.43■□□□□ 0.22
SIX3O95343 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SIX3O95343 AC006504.4-201ENST00000592118 1568 ntBASIC16.43■□□□□ 0.22
SIX3O95343 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 AC002310.6-201ENST00000624451 1377 ntBASIC16.43■□□□□ 0.22
SIX3O95343 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.43■□□□□ 0.22
SIX3O95343 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.43■□□□□ 0.22
SIX3O95343 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 ELK2BP-201ENST00000415014 1224 ntBASIC16.43■□□□□ 0.22
SIX3O95343 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.43■□□□□ 0.22
SIX3O95343 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SIX3O95343 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.43■□□□□ 0.22
SIX3O95343 AF238378.1-201ENST00000526806 358 ntBASIC16.43■□□□□ 0.22
SIX3O95343 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.43■□□□□ 0.22
SIX3O95343 AC021087.4-201ENST00000563761 564 ntBASIC16.43■□□□□ 0.22
SIX3O95343 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.43■□□□□ 0.22
SIX3O95343 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.43■□□□□ 0.22
SIX3O95343 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.43■□□□□ 0.22
SIX3O95343 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
SIX3O95343 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC16.43■□□□□ 0.22
SIX3O95343 AC046158.3-201ENST00000624947 2558 ntBASIC16.43■□□□□ 0.22
SIX3O95343 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
SIX3O95343 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.43■□□□□ 0.22
SIX3O95343 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SIX3O95343 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 AC132872.4-202ENST00000622924 2756 ntBASIC16.43■□□□□ 0.22
SIX3O95343 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX3O95343 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.42■□□□□ 0.22
SIX3O95343 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
SIX3O95343 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SIX3O95343 PI4KAP1-204ENST00000612579 1703 ntBASIC16.42■□□□□ 0.22
SIX3O95343 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SIX3O95343 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC16.42■□□□□ 0.22
SIX3O95343 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SIX3O95343 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.42■□□□□ 0.22
SIX3O95343 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
SIX3O95343 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SIX3O95343 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.42■□□□□ 0.22
SIX3O95343 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX3O95343 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms