Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.2■□□□□ 0.5
RNF40O75150 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF40O75150 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF40O75150 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF40O75150 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
RNF40O75150 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
RNF40O75150 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
RNF40O75150 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF40O75150 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF40O75150 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RNF40O75150 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF40O75150 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.19■□□□□ 0.5
RNF40O75150 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF40O75150 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF40O75150 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF40O75150 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF40O75150 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF40O75150 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF40O75150 SOD2-201ENST00000337404 991 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF40O75150 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.19■□□□□ 0.5
RNF40O75150 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC18.19■□□□□ 0.5
RNF40O75150 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF40O75150 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.19■□□□□ 0.5
RNF40O75150 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
RNF40O75150 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF40O75150 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC18.19■□□□□ 0.5
RNF40O75150 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
RNF40O75150 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.19■□□□□ 0.5
RNF40O75150 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF40O75150 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF40O75150 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.19■□□□□ 0.5
RNF40O75150 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.19■□□□□ 0.5
RNF40O75150 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.19■□□□□ 0.5
RNF40O75150 MTDHP4-201ENST00000600287 670 ntBASIC18.19■□□□□ 0.5
RNF40O75150 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
RNF40O75150 AL691403.2-201ENST00000618460 490 ntBASIC18.19■□□□□ 0.5
RNF40O75150 AC005052.1-201ENST00000625181 2492 ntBASIC18.19■□□□□ 0.5
RNF40O75150 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF40O75150 AL662844.4-201ENST00000606367 2838 ntBASIC18.19■□□□□ 0.5
RNF40O75150 REXO1L11P-201ENST00000620964 1927 ntBASIC18.19■□□□□ 0.5
RNF40O75150 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF40O75150 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
RNF40O75150 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 AC023824.1-201ENST00000562945 2975 ntBASIC18.18■□□□□ 0.5
RNF40O75150 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF40O75150 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF40O75150 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RNF40O75150 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
RNF40O75150 RNF216P1-203ENST00000404404 2427 ntBASIC18.18■□□□□ 0.5
RNF40O75150 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
RNF40O75150 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
RNF40O75150 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF40O75150 AL591424.1-201ENST00000442569 1213 ntBASIC18.18■□□□□ 0.5
RNF40O75150 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.18■□□□□ 0.5
RNF40O75150 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.18■□□□□ 0.5
RNF40O75150 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.18■□□□□ 0.5
RNF40O75150 LINC01451-201ENST00000623792 534 ntBASIC18.18■□□□□ 0.5
RNF40O75150 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.18■□□□□ 0.5
RNF40O75150 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
RNF40O75150 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
RNF40O75150 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
RNF40O75150 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
RNF40O75150 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.17■□□□□ 0.5
RNF40O75150 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
RNF40O75150 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
RNF40O75150 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF40O75150 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF40O75150 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF40O75150 KIRREL3-AS3-201ENST00000404882 831 ntBASIC18.17■□□□□ 0.5
RNF40O75150 SRP19-202ENST00000445150 833 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF40O75150 KRT18P3-201ENST00000451602 1288 ntBASIC18.17■□□□□ 0.5
RNF40O75150 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.17■□□□□ 0.5
RNF40O75150 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC18.17■□□□□ 0.5
RNF40O75150 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms