Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC16.84■□□□□ 0.29
SHOX2O60902 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.84■□□□□ 0.29
SHOX2O60902 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
SHOX2O60902 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
SHOX2O60902 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
SHOX2O60902 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SHOX2O60902 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
SHOX2O60902 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
SHOX2O60902 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.83■□□□□ 0.29
SHOX2O60902 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHOX2O60902 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHOX2O60902 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHOX2O60902 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.83■□□□□ 0.28
SHOX2O60902 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.83■□□□□ 0.28
SHOX2O60902 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHOX2O60902 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.83■□□□□ 0.28
SHOX2O60902 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SHOX2O60902 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.83■□□□□ 0.28
SHOX2O60902 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.83■□□□□ 0.28
SHOX2O60902 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHOX2O60902 TSPY12P-201ENST00000421279 868 ntBASIC16.83■□□□□ 0.28
SHOX2O60902 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SHOX2O60902 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.83■□□□□ 0.28
SHOX2O60902 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.83■□□□□ 0.28
SHOX2O60902 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.83■□□□□ 0.28
SHOX2O60902 AC024563.2-201ENST00000603282 481 ntBASIC16.83■□□□□ 0.28
SHOX2O60902 AC013467.2-201ENST00000605472 835 ntBASIC16.83■□□□□ 0.28
SHOX2O60902 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.83■□□□□ 0.28
SHOX2O60902 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.83■□□□□ 0.28
SHOX2O60902 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHOX2O60902 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
SHOX2O60902 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHOX2O60902 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SHOX2O60902 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
SHOX2O60902 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.83■□□□□ 0.28
SHOX2O60902 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC16.82■□□□□ 0.28
SHOX2O60902 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.82■□□□□ 0.28
SHOX2O60902 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SHOX2O60902 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
SHOX2O60902 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SHOX2O60902 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 AC092338.2-201ENST00000568827 1415 ntBASIC16.82■□□□□ 0.28
SHOX2O60902 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SHOX2O60902 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.82■□□□□ 0.28
SHOX2O60902 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.82■□□□□ 0.28
SHOX2O60902 AC026471.5-201ENST00000615068 467 ntBASIC16.82■□□□□ 0.28
SHOX2O60902 AC004263.2-201ENST00000617183 678 ntBASIC16.82■□□□□ 0.28
SHOX2O60902 AC092865.7-201ENST00000641832 219 ntBASIC16.82■□□□□ 0.28
SHOX2O60902 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC16.82■□□□□ 0.28
SHOX2O60902 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC16.82■□□□□ 0.28
SHOX2O60902 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.82■□□□□ 0.28
SHOX2O60902 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC16.82■□□□□ 0.28
SHOX2O60902 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.82■□□□□ 0.28
SHOX2O60902 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
SHOX2O60902 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SHOX2O60902 AC005912.2-201ENST00000619492 2400 ntBASIC16.81■□□□□ 0.28
SHOX2O60902 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SHOX2O60902 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SHOX2O60902 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SHOX2O60902 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.81■□□□□ 0.28
SHOX2O60902 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.81■□□□□ 0.28
SHOX2O60902 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.81■□□□□ 0.28
SHOX2O60902 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 AC233702.5-201ENST00000584107 538 ntBASIC16.81■□□□□ 0.28
SHOX2O60902 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.81■□□□□ 0.28
SHOX2O60902 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SHOX2O60902 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms