Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 AC098614.1-201ENST00000368528 745 ntBASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 ATP5G2P4-201ENST00000442175 420 ntBASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 AC009477.1-201ENST00000452936 217 ntBASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 MPDU1-223ENST00000582151 728 ntBASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PCDHGA1Q9Y5H4 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
PCDHGA1Q9Y5H4 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
PCDHGA1Q9Y5H4 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDHGA1Q9Y5H4 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.08■□□□□ 0.17
PCDHGA1Q9Y5H4 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
PCDHGA1Q9Y5H4 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDHGA1Q9Y5H4 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDHGA1Q9Y5H4 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
PCDHGA1Q9Y5H4 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
PCDHGA1Q9Y5H4 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
PCDHGA1Q9Y5H4 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 HLA-H-201ENST00000383620 1096 ntBASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 ARSEP1-201ENST00000420443 635 ntBASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 AL353779.1-201ENST00000434793 351 ntBASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 AC087499.5-201ENST00000452760 1342 ntBASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC16.08■□□□□ 0.16
PCDHGA1Q9Y5H4 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 GPR53P-205ENST00000457298 1084 ntBASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 CDK4-206ENST00000549606 558 ntTSL 2 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms