Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC17.91■□□□□ 0.46
SIX4Q9UIU6 AL691403.2-201ENST00000618460 490 ntBASIC17.91■□□□□ 0.46
SIX4Q9UIU6 AL161645.1-201ENST00000622716 1255 ntBASIC17.91■□□□□ 0.46
SIX4Q9UIU6 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX4Q9UIU6 NKILA-202ENST00000614771 2598 ntBASIC17.91■□□□□ 0.46
SIX4Q9UIU6 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC17.91■□□□□ 0.46
SIX4Q9UIU6 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SIX4Q9UIU6 GGT4P-201ENST00000623672 1708 ntBASIC17.91■□□□□ 0.46
SIX4Q9UIU6 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC17.91■□□□□ 0.46
SIX4Q9UIU6 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.91■□□□□ 0.46
SIX4Q9UIU6 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX4Q9UIU6 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SIX4Q9UIU6 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SIX4Q9UIU6 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX4Q9UIU6 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX4Q9UIU6 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.91■□□□□ 0.46
SIX4Q9UIU6 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SIX4Q9UIU6 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 TFAMP1-201ENST00000412727 736 ntBASIC17.9■□□□□ 0.46
SIX4Q9UIU6 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 AC243562.1-201ENST00000560672 389 ntBASIC17.9■□□□□ 0.46
SIX4Q9UIU6 AL135744.1-201ENST00000565098 629 ntBASIC17.9■□□□□ 0.46
SIX4Q9UIU6 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 AC105339.1-204ENST00000636249 355 ntBASIC17.9■□□□□ 0.46
SIX4Q9UIU6 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC17.9■□□□□ 0.46
SIX4Q9UIU6 WASH6P-202ENST00000359512 1437 ntBASIC17.89■□□□□ 0.46
SIX4Q9UIU6 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.89■□□□□ 0.46
SIX4Q9UIU6 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
SIX4Q9UIU6 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.46
SIX4Q9UIU6 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 AC022145.2-201ENST00000598203 171 ntBASIC17.89■□□□□ 0.45
SIX4Q9UIU6 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 AL513210.1-201ENST00000629608 234 ntBASIC17.89■□□□□ 0.45
SIX4Q9UIU6 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 AKAP8P1-201ENST00000434743 1349 ntBASIC17.89■□□□□ 0.45
SIX4Q9UIU6 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX4Q9UIU6 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX4Q9UIU6 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX4Q9UIU6 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.88■□□□□ 0.45
SIX4Q9UIU6 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SIX4Q9UIU6 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX4Q9UIU6 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX4Q9UIU6 AC009053.2-201ENST00000563701 2365 ntBASIC17.88■□□□□ 0.45
SIX4Q9UIU6 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX4Q9UIU6 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
SIX4Q9UIU6 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX4Q9UIU6 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX4Q9UIU6 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms