Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE3Q6ZMZ3 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC19.81■□□□□ 0.76
SYNE3Q6ZMZ3 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE3Q6ZMZ3 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.81■□□□□ 0.76
SYNE3Q6ZMZ3 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SYNE3Q6ZMZ3 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 RPL13AP23-201ENST00000480739 586 ntBASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SYNE3Q6ZMZ3 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 AC124067.4-201ENST00000519691 2379 ntBASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 VN2R19P-201ENST00000442399 1052 ntBASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 BSG-214ENST00000614867 960 ntTSL 3 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 BX640515.1-201ENST00000617215 977 ntBASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 AL391256.1-201ENST00000443260 1855 ntBASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SYNE3Q6ZMZ3 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 AC104109.2-201ENST00000602919 1418 ntBASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 AC091167.2-201ENST00000579581 588 ntBASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 AC005412.3-201ENST00000580309 715 ntBASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 AC120114.3-201ENST00000611923 658 ntBASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SYNE3Q6ZMZ3 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms