Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 CYP2A7P1-201ENST00000595391 815 ntBASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 AL035456.1-201ENST00000456064 1369 ntBASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 RBM39-205ENST00000397370 612 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 RPL28-204ENST00000431533 590 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 AC022210.1-201ENST00000449856 793 ntBASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 AC023310.3-201ENST00000557027 670 ntBASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 RPL28-206ENST00000558752 671 ntTSL 3 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 AC044860.1-202ENST00000559481 777 ntBASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 AC100756.1-201ENST00000562736 682 ntBASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 AC138749.3-201ENST00000567691 622 ntBASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 AC116165.1-201ENST00000611806 668 ntBASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CCDC88AQ3V6T2 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 AL133373.2-201ENST00000623187 2828 ntBASIC20.27■□□□□ 0.84
CCDC88AQ3V6T2 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
CCDC88AQ3V6T2 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC20.27■□□□□ 0.83
CCDC88AQ3V6T2 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC20.27■□□□□ 0.83
CCDC88AQ3V6T2 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC88AQ3V6T2 TUBB8P12-201ENST00000308911 1335 ntBASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 TUBB7P-202ENST00000428444 1305 ntBASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 TUBB8P7-204ENST00000567960 1332 ntBASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 AL512343.1-201ENST00000605837 169 ntBASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC20.26■□□□□ 0.83
CCDC88AQ3V6T2 RN7SL752P-201ENST00000463779 287 ntBASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 54.7 ms