Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
PTCHD3Q3KNS1 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.22
PTCHD3Q3KNS1 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 AL603756.1-201ENST00000606511 2163 ntBASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 BEX3-201ENST00000361298 921 ntTSL 2 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 AC002310.6-201ENST00000624451 1377 ntBASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.45■□□□□ 0.22
PTCHD3Q3KNS1 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 TOP3BP1-201ENST00000420768 1380 ntBASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 AC108073.2-201ENST00000464002 357 ntBASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 MIR4751-201ENST00000578027 74 ntBASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 AC064836.3-201ENST00000607928 673 ntBASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 LINC00895-201ENST00000629028 1637 ntBASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
PTCHD3Q3KNS1 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 UBALD1-205ENST00000590891 2641 ntBASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 AC023274.1-201ENST00000418278 595 ntBASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms