Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
RPL39P62891 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPL39P62891 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
RPL39P62891 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPL39P62891 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
RPL39P62891 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC11.95□□□□□ -0.5
RPL39P62891 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC11.95□□□□□ -0.5
RPL39P62891 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
RPL39P62891 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPL39P62891 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPL39P62891 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
RPL39P62891 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC11.94□□□□□ -0.5
RPL39P62891 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC11.94□□□□□ -0.5
RPL39P62891 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC11.94□□□□□ -0.5
RPL39P62891 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
RPL39P62891 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 AC010491.1-201ENST00000563101 2797 ntBASIC11.94□□□□□ -0.5
RPL39P62891 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 BAALC-201ENST00000297574 801 ntTSL 3 BASIC11.94□□□□□ -0.5
RPL39P62891 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC11.94□□□□□ -0.5
RPL39P62891 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC11.94□□□□□ -0.5
RPL39P62891 AC092597.1-201ENST00000487352 616 ntBASIC11.94□□□□□ -0.5
RPL39P62891 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC11.94□□□□□ -0.5
RPL39P62891 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC11.94□□□□□ -0.5
RPL39P62891 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC11.94□□□□□ -0.5
RPL39P62891 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC11.94□□□□□ -0.5
RPL39P62891 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
RPL39P62891 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
RPL39P62891 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC11.94□□□□□ -0.5
RPL39P62891 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC11.94□□□□□ -0.5
RPL39P62891 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
RPL39P62891 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC11.94□□□□□ -0.5
RPL39P62891 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC11.94□□□□□ -0.5
RPL39P62891 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC11.93□□□□□ -0.5
RPL39P62891 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC11.93□□□□□ -0.5
RPL39P62891 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
RPL39P62891 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC11.93□□□□□ -0.5
RPL39P62891 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 MMP23A-201ENST00000234610 1017 ntBASIC11.93□□□□□ -0.5
RPL39P62891 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC11.93□□□□□ -0.5
RPL39P62891 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC11.93□□□□□ -0.5
RPL39P62891 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
RPL39P62891 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
RPL39P62891 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC11.93□□□□□ -0.5
RPL39P62891 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
RPL39P62891 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC11.93□□□□□ -0.5
RPL39P62891 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC11.93□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms