Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 TUBB8P7-204ENST00000567960 1332 ntBASIC19.26■□□□□ 0.67
HMGCS2P54868 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGCS2P54868 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGCS2P54868 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGCS2P54868 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGCS2P54868 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HMGCS2P54868 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGCS2P54868 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HMGCS2P54868 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGCS2P54868 CALY-202ENST00000368555 783 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGCS2P54868 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGCS2P54868 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC19.26■□□□□ 0.67
HMGCS2P54868 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGCS2P54868 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC19.26■□□□□ 0.67
HMGCS2P54868 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC19.26■□□□□ 0.67
HMGCS2P54868 NME2P1-201ENST00000426182 414 ntBASIC19.26■□□□□ 0.67
HMGCS2P54868 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGCS2P54868 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGCS2P54868 HLA-J-202ENST00000469281 1241 ntBASIC19.26■□□□□ 0.67
HMGCS2P54868 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HMGCS2P54868 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
HMGCS2P54868 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC19.26■□□□□ 0.67
HMGCS2P54868 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGCS2P54868 AC009407.1-201ENST00000568958 598 ntBASIC19.26■□□□□ 0.67
HMGCS2P54868 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC19.26■□□□□ 0.67
HMGCS2P54868 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.26■□□□□ 0.67
HMGCS2P54868 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.26■□□□□ 0.67
HMGCS2P54868 AC008738.7-201ENST00000609744 511 ntBASIC19.26■□□□□ 0.67
HMGCS2P54868 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HMGCS2P54868 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HMGCS2P54868 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGCS2P54868 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGCS2P54868 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
HMGCS2P54868 AC006277.1-201ENST00000624348 1610 ntBASIC19.25■□□□□ 0.67
HMGCS2P54868 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.25■□□□□ 0.67
HMGCS2P54868 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 CETN4P-206ENST00000642099 2168 ntBASIC19.25■□□□□ 0.67
HMGCS2P54868 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGCS2P54868 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGCS2P54868 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGCS2P54868 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGCS2P54868 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
HMGCS2P54868 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
HMGCS2P54868 RPL37AP1-201ENST00000412502 279 ntBASIC19.25■□□□□ 0.67
HMGCS2P54868 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGCS2P54868 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
HMGCS2P54868 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC19.25■□□□□ 0.67
HMGCS2P54868 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 STOM-203ENST00000538954 1257 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGCS2P54868 AC124947.2-201ENST00000547118 1133 ntBASIC19.25■□□□□ 0.67
HMGCS2P54868 CR383656.12-201ENST00000549567 513 ntBASIC19.25■□□□□ 0.67
HMGCS2P54868 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.25■□□□□ 0.67
HMGCS2P54868 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGCS2P54868 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC19.25■□□□□ 0.67
HMGCS2P54868 LITAF-210ENST00000571976 548 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGCS2P54868 LITAF-214ENST00000574703 486 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGCS2P54868 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC19.25■□□□□ 0.67
HMGCS2P54868 RN7SL828P-201ENST00000607615 303 ntBASIC19.25■□□□□ 0.67
HMGCS2P54868 AL589739.1-201ENST00000607720 493 ntBASIC19.25■□□□□ 0.67
HMGCS2P54868 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGCS2P54868 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
HMGCS2P54868 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC19.25■□□□□ 0.67
HMGCS2P54868 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
HMGCS2P54868 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC19.25■□□□□ 0.67
HMGCS2P54868 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGCS2P54868 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGCS2P54868 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGCS2P54868 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.24■□□□□ 0.67
HMGCS2P54868 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGCS2P54868 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGCS2P54868 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGCS2P54868 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
HMGCS2P54868 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
HMGCS2P54868 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
HMGCS2P54868 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.24■□□□□ 0.67
HMGCS2P54868 COX5BP8-201ENST00000416911 349 ntBASIC19.24■□□□□ 0.67
HMGCS2P54868 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
HMGCS2P54868 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGCS2P54868 MEIS3P1-201ENST00000495167 958 ntBASIC19.24■□□□□ 0.67
HMGCS2P54868 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGCS2P54868 BANF1P1-201ENST00000553684 263 ntBASIC19.24■□□□□ 0.67
HMGCS2P54868 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC19.24■□□□□ 0.67
HMGCS2P54868 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC19.24■□□□□ 0.67
HMGCS2P54868 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC19.24■□□□□ 0.67
HMGCS2P54868 AL844908.2-201ENST00000609461 460 ntBASIC19.24■□□□□ 0.67
HMGCS2P54868 RAB34-223ENST00000636154 730 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGCS2P54868 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC19.24■□□□□ 0.67
HMGCS2P54868 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
HMGCS2P54868 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms