Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.99■□□□□ 0.15
PTPN6P29350 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.98■□□□□ 0.15
PTPN6P29350 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.98■□□□□ 0.15
PTPN6P29350 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.98■□□□□ 0.15
PTPN6P29350 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PTPN6P29350 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.98■□□□□ 0.15
PTPN6P29350 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.98■□□□□ 0.15
PTPN6P29350 KRT18P67-201ENST00000432816 1264 ntBASIC15.98■□□□□ 0.15
PTPN6P29350 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.98■□□□□ 0.15
PTPN6P29350 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC15.98■□□□□ 0.15
PTPN6P29350 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
PTPN6P29350 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 AL662844.1-201ENST00000546340 181 ntBASIC15.98■□□□□ 0.15
PTPN6P29350 TERC-201ENST00000602385 541 ntBASIC15.98■□□□□ 0.15
PTPN6P29350 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 AL353135.1-201ENST00000606729 504 ntBASIC15.98■□□□□ 0.15
PTPN6P29350 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.98■□□□□ 0.15
PTPN6P29350 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
PTPN6P29350 AL139011.1-202ENST00000642063 584 ntBASIC15.98■□□□□ 0.15
PTPN6P29350 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
PTPN6P29350 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.98■□□□□ 0.15
PTPN6P29350 AC022188.1-201ENST00000620960 1664 ntBASIC15.98■□□□□ 0.15
PTPN6P29350 AC008741.2-201ENST00000612792 3115 ntBASIC15.98■□□□□ 0.15
PTPN6P29350 AC243591.1-201ENST00000452967 1364 ntBASIC15.98■□□□□ 0.15
PTPN6P29350 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PTPN6P29350 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC15.98■□□□□ 0.15
PTPN6P29350 AC006277.1-201ENST00000624348 1610 ntBASIC15.97■□□□□ 0.15
PTPN6P29350 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.97■□□□□ 0.15
PTPN6P29350 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN6P29350 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN6P29350 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN6P29350 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN6P29350 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.97■□□□□ 0.15
PTPN6P29350 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 ABR-203ENST00000536794 2213 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN6P29350 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN6P29350 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
PTPN6P29350 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC15.97■□□□□ 0.15
PTPN6P29350 PPIE-208ENST00000470213 927 ntTSL 3 BASIC15.97■□□□□ 0.15
PTPN6P29350 AC073648.2-201ENST00000510116 352 ntBASIC15.97■□□□□ 0.15
PTPN6P29350 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN6P29350 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN6P29350 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
PTPN6P29350 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN6P29350 NKAPP1-205ENST00000585790 367 ntBASIC15.97■□□□□ 0.15
PTPN6P29350 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC15.97■□□□□ 0.15
PTPN6P29350 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
PTPN6P29350 AC064862.7-201ENST00000604520 867 ntBASIC15.97■□□□□ 0.15
PTPN6P29350 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC15.97■□□□□ 0.15
PTPN6P29350 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN6P29350 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN6P29350 SNX33P1-201ENST00000592116 1762 ntBASIC15.97■□□□□ 0.15
PTPN6P29350 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN6P29350 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC15.97■□□□□ 0.15
PTPN6P29350 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
PTPN6P29350 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.97■□□□□ 0.15
PTPN6P29350 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
PTPN6P29350 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN6P29350 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN6P29350 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.96■□□□□ 0.15
PTPN6P29350 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.96■□□□□ 0.15
PTPN6P29350 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
PTPN6P29350 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms