Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC20.82■□□□□ 0.92
COL5A3P25940 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC20.82■□□□□ 0.92
COL5A3P25940 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC20.82■□□□□ 0.92
COL5A3P25940 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A3P25940 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A3P25940 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A3P25940 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC20.82■□□□□ 0.92
COL5A3P25940 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
COL5A3P25940 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC20.82■□□□□ 0.92
COL5A3P25940 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A3P25940 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A3P25940 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
COL5A3P25940 AL390961.4-201ENST00000623958 2535 ntBASIC20.82■□□□□ 0.92
COL5A3P25940 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
COL5A3P25940 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
COL5A3P25940 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.82■□□□□ 0.92
COL5A3P25940 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC20.82■□□□□ 0.92
COL5A3P25940 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC20.81■□□□□ 0.92
COL5A3P25940 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC20.81■□□□□ 0.92
COL5A3P25940 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC20.81■□□□□ 0.92
COL5A3P25940 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC20.81■□□□□ 0.92
COL5A3P25940 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL5A3P25940 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL5A3P25940 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL5A3P25940 AC092068.3-201ENST00000587894 2016 ntBASIC20.81■□□□□ 0.92
COL5A3P25940 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.81■□□□□ 0.92
COL5A3P25940 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.81■□□□□ 0.92
COL5A3P25940 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC20.81■□□□□ 0.92
COL5A3P25940 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL5A3P25940 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC20.81■□□□□ 0.92
COL5A3P25940 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC20.81■□□□□ 0.92
COL5A3P25940 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL5A3P25940 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL5A3P25940 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL5A3P25940 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC20.81■□□□□ 0.92
COL5A3P25940 MYCLP2-201ENST00000449268 967 ntBASIC20.81■□□□□ 0.92
COL5A3P25940 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC20.81■□□□□ 0.92
COL5A3P25940 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC20.81■□□□□ 0.92
COL5A3P25940 AC010319.3-201ENST00000597028 470 ntBASIC20.81■□□□□ 0.92
COL5A3P25940 AC074044.1-201ENST00000609673 707 ntBASIC20.81■□□□□ 0.92
COL5A3P25940 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC20.81■□□□□ 0.92
COL5A3P25940 WNT11-204ENST00000621122 789 ntTSL 5 BASIC20.81■□□□□ 0.92
COL5A3P25940 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL5A3P25940 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL5A3P25940 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC20.8■□□□□ 0.92
COL5A3P25940 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL5A3P25940 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.8■□□□□ 0.92
COL5A3P25940 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COL5A3P25940 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL5A3P25940 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.8■□□□□ 0.92
COL5A3P25940 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL5A3P25940 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC20.8■□□□□ 0.92
COL5A3P25940 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL5A3P25940 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL5A3P25940 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL5A3P25940 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COL5A3P25940 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC20.8■□□□□ 0.92
COL5A3P25940 AC022210.1-201ENST00000449856 793 ntBASIC20.8■□□□□ 0.92
COL5A3P25940 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COL5A3P25940 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
COL5A3P25940 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
COL5A3P25940 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC20.8■□□□□ 0.92
COL5A3P25940 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.8■□□□□ 0.92
COL5A3P25940 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
COL5A3P25940 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC20.8■□□□□ 0.92
COL5A3P25940 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.8■□□□□ 0.92
COL5A3P25940 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COL5A3P25940 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL5A3P25940 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL5A3P25940 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A3P25940 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A3P25940 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A3P25940 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A3P25940 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A3P25940 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A3P25940 FAM86MP-201ENST00000340703 885 ntBASIC20.79■□□□□ 0.92
COL5A3P25940 EEF1DP4-201ENST00000446006 880 ntBASIC20.79■□□□□ 0.92
COL5A3P25940 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.79■□□□□ 0.92
COL5A3P25940 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC20.79■□□□□ 0.92
COL5A3P25940 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC20.79■□□□□ 0.92
COL5A3P25940 AL512343.1-201ENST00000605837 169 ntBASIC20.79■□□□□ 0.92
COL5A3P25940 AC026979.3-201ENST00000607315 403 ntBASIC20.79■□□□□ 0.92
COL5A3P25940 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC20.79■□□□□ 0.92
COL5A3P25940 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A3P25940 CLK3P2-201ENST00000427566 1453 ntBASIC20.79■□□□□ 0.92
COL5A3P25940 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A3P25940 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
COL5A3P25940 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A3P25940 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL5A3P25940 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
COL5A3P25940 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC20.79■□□□□ 0.92
COL5A3P25940 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC20.79■□□□□ 0.92
COL5A3P25940 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A3P25940 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
COL5A3P25940 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC20.78■□□□□ 0.92
COL5A3P25940 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC20.78■□□□□ 0.92
COL5A3P25940 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC20.78■□□□□ 0.92
COL5A3P25940 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL5A3P25940 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
COL5A3P25940 AP005482.1-201ENST00000563722 1273 ntBASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms