Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL645608.8-201ENST00000606034 2086 ntBASIC14.27□□□□□ -0.12
USF1P22415 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USF1P22415 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
USF1P22415 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USF1P22415 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.12
USF1P22415 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USF1P22415 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USF1P22415 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USF1P22415 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USF1P22415 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
USF1P22415 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC14.27□□□□□ -0.12
USF1P22415 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
USF1P22415 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
USF1P22415 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 PCDHA12-202ENST00000613593 2588 ntBASIC14.27□□□□□ -0.13
USF1P22415 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
USF1P22415 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC14.27□□□□□ -0.13
USF1P22415 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC14.27□□□□□ -0.13
USF1P22415 PAWRP1-201ENST00000451083 565 ntBASIC14.27□□□□□ -0.13
USF1P22415 AC023141.5-201ENST00000458585 616 ntBASIC14.27□□□□□ -0.13
USF1P22415 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC14.27□□□□□ -0.13
USF1P22415 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC14.27□□□□□ -0.13
USF1P22415 AC022145.2-201ENST00000598203 171 ntBASIC14.27□□□□□ -0.13
USF1P22415 ACTL9-202ENST00000612068 1252 ntBASIC14.27□□□□□ -0.13
USF1P22415 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.27□□□□□ -0.13
USF1P22415 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.27□□□□□ -0.13
USF1P22415 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC14.27□□□□□ -0.13
USF1P22415 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
USF1P22415 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC14.27□□□□□ -0.13
USF1P22415 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC14.27□□□□□ -0.13
USF1P22415 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
USF1P22415 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
USF1P22415 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.26□□□□□ -0.13
USF1P22415 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.26□□□□□ -0.13
USF1P22415 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
USF1P22415 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC14.26□□□□□ -0.13
USF1P22415 AC141586.5-201ENST00000624546 2050 ntBASIC14.26□□□□□ -0.13
USF1P22415 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC14.26□□□□□ -0.13
USF1P22415 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
USF1P22415 FALEC-201ENST00000416894 566 ntTSL 3 BASIC14.26□□□□□ -0.13
USF1P22415 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.26□□□□□ -0.13
USF1P22415 HLA-J-203ENST00000494367 1087 ntBASIC14.26□□□□□ -0.13
USF1P22415 FAM86C2P-203ENST00000528684 1004 ntBASIC14.26□□□□□ -0.13
USF1P22415 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
USF1P22415 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.26□□□□□ -0.13
USF1P22415 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.26□□□□□ -0.13
USF1P22415 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC14.26□□□□□ -0.13
USF1P22415 AC092919.2-201ENST00000623631 1645 ntBASIC14.26□□□□□ -0.13
USF1P22415 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
USF1P22415 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
USF1P22415 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC14.25□□□□□ -0.13
USF1P22415 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC14.25□□□□□ -0.13
USF1P22415 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
USF1P22415 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
USF1P22415 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
USF1P22415 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC14.25□□□□□ -0.13
USF1P22415 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms