Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL5A1P20908 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL5A1P20908 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
COL5A1P20908 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL5A1P20908 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
COL5A1P20908 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
COL5A1P20908 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.9■□□□□ 0.14
COL5A1P20908 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.9■□□□□ 0.14
COL5A1P20908 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL5A1P20908 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.9■□□□□ 0.14
COL5A1P20908 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.9■□□□□ 0.14
COL5A1P20908 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.9■□□□□ 0.14
COL5A1P20908 AC061975.2-201ENST00000581722 295 ntBASIC15.9■□□□□ 0.14
COL5A1P20908 MIR6805-201ENST00000615055 62 ntBASIC15.9■□□□□ 0.14
COL5A1P20908 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC15.9■□□□□ 0.14
COL5A1P20908 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL5A1P20908 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC15.9■□□□□ 0.14
COL5A1P20908 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.9■□□□□ 0.14
COL5A1P20908 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC15.9■□□□□ 0.14
COL5A1P20908 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL5A1P20908 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.9■□□□□ 0.14
COL5A1P20908 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL5A1P20908 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL5A1P20908 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL5A1P20908 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.9■□□□□ 0.14
COL5A1P20908 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL5A1P20908 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.89■□□□□ 0.14
COL5A1P20908 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.89■□□□□ 0.14
COL5A1P20908 AC007541.1-201ENST00000570282 1469 ntBASIC15.89■□□□□ 0.14
COL5A1P20908 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 SPDYE19P-201ENST00000338590 713 ntBASIC15.89■□□□□ 0.13
COL5A1P20908 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC15.89■□□□□ 0.13
COL5A1P20908 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC15.89■□□□□ 0.13
COL5A1P20908 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC15.89■□□□□ 0.13
COL5A1P20908 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC15.89■□□□□ 0.13
COL5A1P20908 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
COL5A1P20908 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
COL5A1P20908 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.89■□□□□ 0.13
COL5A1P20908 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 AC005332.8-201ENST00000622750 2735 ntBASIC15.89■□□□□ 0.13
COL5A1P20908 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
COL5A1P20908 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.89■□□□□ 0.13
COL5A1P20908 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.89■□□□□ 0.13
COL5A1P20908 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
COL5A1P20908 AC087499.6-201ENST00000411576 835 ntBASIC15.89■□□□□ 0.13
COL5A1P20908 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.89■□□□□ 0.13
COL5A1P20908 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 AC008494.3-201ENST00000606615 944 ntBASIC15.89■□□□□ 0.13
COL5A1P20908 AL162274.1-201ENST00000617191 1098 ntBASIC15.89■□□□□ 0.13
COL5A1P20908 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
COL5A1P20908 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
COL5A1P20908 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
COL5A1P20908 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.88■□□□□ 0.13
COL5A1P20908 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
COL5A1P20908 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.88■□□□□ 0.13
COL5A1P20908 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC15.88■□□□□ 0.13
COL5A1P20908 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
COL5A1P20908 AL023806.1-201ENST00000603994 1649 ntBASIC15.88■□□□□ 0.13
COL5A1P20908 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
COL5A1P20908 DPM2-202ENST00000373110 738 ntTSL 2 BASIC15.88■□□□□ 0.13
COL5A1P20908 PGF-202ENST00000405431 666 ntTSL 5 BASIC15.88■□□□□ 0.13
COL5A1P20908 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.88■□□□□ 0.13
COL5A1P20908 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC15.88■□□□□ 0.13
COL5A1P20908 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC15.88■□□□□ 0.13
COL5A1P20908 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.88■□□□□ 0.13
COL5A1P20908 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 NAA38-207ENST00000576861 556 ntTSL 3 BASIC15.88■□□□□ 0.13
COL5A1P20908 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.88■□□□□ 0.13
COL5A1P20908 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.88■□□□□ 0.13
COL5A1P20908 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.88■□□□□ 0.13
COL5A1P20908 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
COL5A1P20908 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
COL5A1P20908 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
COL5A1P20908 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.88■□□□□ 0.13
COL5A1P20908 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC15.88■□□□□ 0.13
COL5A1P20908 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
COL5A1P20908 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms