Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.75■□□□□ 0.27
MSH3P20585 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.75■□□□□ 0.27
MSH3P20585 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH3P20585 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH3P20585 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.75■□□□□ 0.27
MSH3P20585 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MSH3P20585 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.75■□□□□ 0.27
MSH3P20585 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
MSH3P20585 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH3P20585 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH3P20585 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.75■□□□□ 0.27
MSH3P20585 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
MSH3P20585 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
MSH3P20585 MED15P5-201ENST00000423150 992 ntBASIC16.75■□□□□ 0.27
MSH3P20585 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.75■□□□□ 0.27
MSH3P20585 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
MSH3P20585 CXCL1P1-201ENST00000502804 216 ntBASIC16.75■□□□□ 0.27
MSH3P20585 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.75■□□□□ 0.27
MSH3P20585 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.75■□□□□ 0.27
MSH3P20585 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.75■□□□□ 0.27
MSH3P20585 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
MSH3P20585 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.75■□□□□ 0.27
MSH3P20585 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.75■□□□□ 0.27
MSH3P20585 AC064836.3-201ENST00000607928 673 ntBASIC16.75■□□□□ 0.27
MSH3P20585 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.75■□□□□ 0.27
MSH3P20585 AC105020.1-201ENST00000435356 2205 ntBASIC16.75■□□□□ 0.27
MSH3P20585 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH3P20585 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.75■□□□□ 0.27
MSH3P20585 NFIC-211ENST00000641145 8399 ntBASIC16.75■□□□□ 0.27
MSH3P20585 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
MSH3P20585 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
MSH3P20585 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH3P20585 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.75■□□□□ 0.27
MSH3P20585 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
MSH3P20585 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
MSH3P20585 AGGF1P2-201ENST00000426656 2106 ntBASIC16.75■□□□□ 0.27
MSH3P20585 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
MSH3P20585 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.74■□□□□ 0.27
MSH3P20585 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.74■□□□□ 0.27
MSH3P20585 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
MSH3P20585 MIR940-201ENST00000401276 94 ntBASIC16.74■□□□□ 0.27
MSH3P20585 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.74■□□□□ 0.27
MSH3P20585 AL591424.1-201ENST00000442569 1213 ntBASIC16.74■□□□□ 0.27
MSH3P20585 HCG4B-203ENST00000450128 991 ntBASIC16.74■□□□□ 0.27
MSH3P20585 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.74■□□□□ 0.27
MSH3P20585 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 AP002490.2-201ENST00000524791 560 ntBASIC16.74■□□□□ 0.27
MSH3P20585 AC107918.2-201ENST00000530817 355 ntBASIC16.74■□□□□ 0.27
MSH3P20585 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.74■□□□□ 0.27
MSH3P20585 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
MSH3P20585 AC140113.2-201ENST00000604370 208 ntBASIC16.74■□□□□ 0.27
MSH3P20585 OVCH1-AS1-204ENST00000641955 5529 ntBASIC16.74■□□□□ 0.27
MSH3P20585 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.74■□□□□ 0.27
MSH3P20585 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.74■□□□□ 0.27
MSH3P20585 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
MSH3P20585 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
MSH3P20585 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.74■□□□□ 0.27
MSH3P20585 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.74■□□□□ 0.27
MSH3P20585 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
MSH3P20585 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.74■□□□□ 0.27
MSH3P20585 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.74■□□□□ 0.27
MSH3P20585 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.73■□□□□ 0.27
MSH3P20585 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC16.73■□□□□ 0.27
MSH3P20585 FER1L4-210ENST00000615531 5998 ntBASIC16.73■□□□□ 0.27
MSH3P20585 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
MSH3P20585 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
MSH3P20585 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
MSH3P20585 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
MSH3P20585 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.73■□□□□ 0.27
MSH3P20585 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
MSH3P20585 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.73■□□□□ 0.27
MSH3P20585 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.73■□□□□ 0.27
MSH3P20585 FAM185BP-201ENST00000443595 716 ntBASIC16.73■□□□□ 0.27
MSH3P20585 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.73■□□□□ 0.27
MSH3P20585 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.73■□□□□ 0.27
MSH3P20585 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
MSH3P20585 RNA5SP416-201ENST00000516838 111 ntBASIC16.73■□□□□ 0.27
MSH3P20585 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms