Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC009078.2-202ENST00000463353 338 ntBASIC19.41■□□□□ 0.7
LIG1P18858 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC19.41■□□□□ 0.7
LIG1P18858 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC19.41■□□□□ 0.7
LIG1P18858 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.41■□□□□ 0.7
LIG1P18858 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.41■□□□□ 0.7
LIG1P18858 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC19.41■□□□□ 0.7
LIG1P18858 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC19.41■□□□□ 0.7
LIG1P18858 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
LIG1P18858 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.41■□□□□ 0.7
LIG1P18858 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
LIG1P18858 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
LIG1P18858 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
LIG1P18858 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.41■□□□□ 0.7
LIG1P18858 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.4■□□□□ 0.7
LIG1P18858 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.4■□□□□ 0.7
LIG1P18858 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
LIG1P18858 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.4■□□□□ 0.7
LIG1P18858 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
LIG1P18858 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC19.4■□□□□ 0.7
LIG1P18858 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.4■□□□□ 0.7
LIG1P18858 RBSN-204ENST00000449050 903 ntTSL 2 BASIC19.4■□□□□ 0.7
LIG1P18858 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC19.4■□□□□ 0.7
LIG1P18858 TP73-AS1-207ENST00000624167 988 ntBASIC19.4■□□□□ 0.7
LIG1P18858 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
LIG1P18858 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC19.4■□□□□ 0.7
LIG1P18858 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.4■□□□□ 0.7
LIG1P18858 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.4■□□□□ 0.7
LIG1P18858 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
LIG1P18858 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIG1P18858 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.4■□□□□ 0.7
LIG1P18858 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC19.4■□□□□ 0.7
LIG1P18858 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LIG1P18858 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIG1P18858 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIG1P18858 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
LIG1P18858 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
LIG1P18858 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIG1P18858 PAUPAR-201ENST00000630360 2965 ntBASIC19.39■□□□□ 0.7
LIG1P18858 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
LIG1P18858 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.39■□□□□ 0.69
LIG1P18858 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
LIG1P18858 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
LIG1P18858 CD9-202ENST00000382515 1229 ntTSL 5 BASIC19.39■□□□□ 0.69
LIG1P18858 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.39■□□□□ 0.69
LIG1P18858 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.39■□□□□ 0.69
LIG1P18858 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
LIG1P18858 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC19.39■□□□□ 0.69
LIG1P18858 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.39■□□□□ 0.69
LIG1P18858 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
LIG1P18858 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
LIG1P18858 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.39■□□□□ 0.69
LIG1P18858 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC19.39■□□□□ 0.69
LIG1P18858 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.39■□□□□ 0.69
LIG1P18858 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC19.39■□□□□ 0.69
LIG1P18858 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.39■□□□□ 0.69
LIG1P18858 AP005117.1-201ENST00000584346 1413 ntBASIC19.39■□□□□ 0.69
LIG1P18858 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC19.39■□□□□ 0.69
LIG1P18858 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.39■□□□□ 0.69
LIG1P18858 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIG1P18858 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIG1P18858 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms