Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 COPS8-203ENST00000409334 794 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A2P12110 RBM17P3-201ENST00000417687 1192 ntBASIC16.65■□□□□ 0.26
COL6A2P12110 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
COL6A2P12110 PAWRP1-201ENST00000451083 565 ntBASIC16.65■□□□□ 0.26
COL6A2P12110 AC132008.2-207ENST00000454517 770 ntBASIC16.65■□□□□ 0.26
COL6A2P12110 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A2P12110 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A2P12110 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.65■□□□□ 0.26
COL6A2P12110 AC064862.7-201ENST00000604520 867 ntBASIC16.65■□□□□ 0.26
COL6A2P12110 AL139424.1-201ENST00000607572 797 ntBASIC16.65■□□□□ 0.26
COL6A2P12110 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 AL139288.1-201ENST00000623748 933 ntBASIC16.65■□□□□ 0.26
COL6A2P12110 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
COL6A2P12110 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
COL6A2P12110 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A2P12110 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A2P12110 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
COL6A2P12110 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A2P12110 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.65■□□□□ 0.26
COL6A2P12110 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
COL6A2P12110 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL6A2P12110 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.65■□□□□ 0.26
COL6A2P12110 AC002310.6-201ENST00000624451 1377 ntBASIC16.64■□□□□ 0.26
COL6A2P12110 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.64■□□□□ 0.26
COL6A2P12110 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.26
COL6A2P12110 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.64■□□□□ 0.25
COL6A2P12110 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC16.64■□□□□ 0.25
COL6A2P12110 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC16.64■□□□□ 0.25
COL6A2P12110 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
COL6A2P12110 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.64■□□□□ 0.25
COL6A2P12110 BX005266.1-201ENST00000473402 457 ntBASIC16.64■□□□□ 0.25
COL6A2P12110 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC16.64■□□□□ 0.25
COL6A2P12110 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.64■□□□□ 0.25
COL6A2P12110 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.64■□□□□ 0.25
COL6A2P12110 IGHV3OR16-7-201ENST00000604106 360 ntBASIC16.64■□□□□ 0.25
COL6A2P12110 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
COL6A2P12110 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.64■□□□□ 0.25
COL6A2P12110 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.64■□□□□ 0.25
COL6A2P12110 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.64■□□□□ 0.25
COL6A2P12110 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.64■□□□□ 0.25
COL6A2P12110 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
COL6A2P12110 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
COL6A2P12110 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
COL6A2P12110 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
COL6A2P12110 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
COL6A2P12110 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.63■□□□□ 0.25
COL6A2P12110 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC16.63■□□□□ 0.25
COL6A2P12110 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A2P12110 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
COL6A2P12110 MIR4492-201ENST00000581627 80 ntBASIC16.63■□□□□ 0.25
COL6A2P12110 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.63■□□□□ 0.25
COL6A2P12110 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.63■□□□□ 0.25
COL6A2P12110 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
COL6A2P12110 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
COL6A2P12110 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
COL6A2P12110 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms