Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CSB-PGBD3P0DP91 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC22.12■■□□□ 1.13
CSB-PGBD3P0DP91 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CSB-PGBD3P0DP91 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CSB-PGBD3P0DP91 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC22.12■■□□□ 1.13
CSB-PGBD3P0DP91 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CSB-PGBD3P0DP91 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC22.12■■□□□ 1.13
CSB-PGBD3P0DP91 AC073439.1-201ENST00000624121 1774 ntBASIC22.12■■□□□ 1.13
CSB-PGBD3P0DP91 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CSB-PGBD3P0DP91 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
CSB-PGBD3P0DP91 PKD1P1-201ENST00000458669 6805 ntBASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 FAM220BP-201ENST00000377689 816 ntBASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 AC135586.1-201ENST00000539323 574 ntBASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 AC105021.1-202ENST00000570572 669 ntBASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
CSB-PGBD3P0DP91 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 CENPM-206ENST00000407253 818 ntTSL 2 BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 RNA5SP410-201ENST00000516285 106 ntBASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 HILS1-202ENST00000545329 423 ntBASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 MAX-210ENST00000555419 765 ntTSL 5 BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 ARL16-202ENST00000570561 768 ntTSL 2 BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
CSB-PGBD3P0DP91 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 TPR-209ENST00000613151 2478 ntTSL 5 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 AC098614.1-201ENST00000368528 745 ntBASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC22.09■■□□□ 1.13
CSB-PGBD3P0DP91 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CSB-PGBD3P0DP91 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CSB-PGBD3P0DP91 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
CSB-PGBD3P0DP91 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CSB-PGBD3P0DP91 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CSB-PGBD3P0DP91 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
CSB-PGBD3P0DP91 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
CSB-PGBD3P0DP91 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms