Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.71■□□□□ 0.27
PDGFBP01127 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFBP01127 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFBP01127 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFBP01127 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFBP01127 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
PDGFBP01127 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
PDGFBP01127 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PDGFBP01127 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
PDGFBP01127 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
PDGFBP01127 TUBB1P2-201ENST00000422712 1306 ntBASIC16.7■□□□□ 0.26
PDGFBP01127 TUBB1P1-201ENST00000503144 1300 ntBASIC16.7■□□□□ 0.26
PDGFBP01127 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PDGFBP01127 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.7■□□□□ 0.26
PDGFBP01127 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC16.7■□□□□ 0.26
PDGFBP01127 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
PDGFBP01127 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.7■□□□□ 0.26
PDGFBP01127 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.7■□□□□ 0.26
PDGFBP01127 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC16.7■□□□□ 0.26
PDGFBP01127 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.7■□□□□ 0.26
PDGFBP01127 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.7■□□□□ 0.26
PDGFBP01127 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PDGFBP01127 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC16.7■□□□□ 0.26
PDGFBP01127 SERBP1P3-201ENST00000459980 809 ntBASIC16.7■□□□□ 0.26
PDGFBP01127 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC16.7■□□□□ 0.26
PDGFBP01127 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC16.7■□□□□ 0.26
PDGFBP01127 SDHAP3-202ENST00000515467 728 ntBASIC16.7■□□□□ 0.26
PDGFBP01127 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.7■□□□□ 0.26
PDGFBP01127 MIR3615-201ENST00000581999 87 ntBASIC16.7■□□□□ 0.26
PDGFBP01127 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
PDGFBP01127 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC16.7■□□□□ 0.26
PDGFBP01127 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
PDGFBP01127 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
PDGFBP01127 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.7■□□□□ 0.26
PDGFBP01127 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
PDGFBP01127 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC16.69■□□□□ 0.26
PDGFBP01127 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.69■□□□□ 0.26
PDGFBP01127 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.69■□□□□ 0.26
PDGFBP01127 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.69■□□□□ 0.26
PDGFBP01127 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.69■□□□□ 0.26
PDGFBP01127 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.69■□□□□ 0.26
PDGFBP01127 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC16.69■□□□□ 0.26
PDGFBP01127 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.69■□□□□ 0.26
PDGFBP01127 KLF2P4-201ENST00000451959 1225 ntBASIC16.69■□□□□ 0.26
PDGFBP01127 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
PDGFBP01127 RHOQP1-201ENST00000555758 579 ntBASIC16.69■□□□□ 0.26
PDGFBP01127 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.69■□□□□ 0.26
PDGFBP01127 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.69■□□□□ 0.26
PDGFBP01127 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.69■□□□□ 0.26
PDGFBP01127 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.69■□□□□ 0.26
PDGFBP01127 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.69■□□□□ 0.26
PDGFBP01127 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.69■□□□□ 0.26
PDGFBP01127 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
PDGFBP01127 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
PDGFBP01127 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.69■□□□□ 0.26
PDGFBP01127 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
PDGFBP01127 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
PDGFBP01127 EGFEM1P-202ENST00000431685 1563 ntBASIC16.68■□□□□ 0.26
PDGFBP01127 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC16.68■□□□□ 0.26
PDGFBP01127 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
PDGFBP01127 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
PDGFBP01127 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC16.68■□□□□ 0.26
PDGFBP01127 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.68■□□□□ 0.26
PDGFBP01127 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
PDGFBP01127 CLK3P2-201ENST00000427566 1453 ntBASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms