Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.47■□□□□ 0.23
SIX3O95343 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
SIX3O95343 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX3O95343 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX3O95343 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
SIX3O95343 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
SIX3O95343 AKR1C7P-201ENST00000305623 895 ntBASIC16.46■□□□□ 0.23
SIX3O95343 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX3O95343 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.46■□□□□ 0.23
SIX3O95343 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX3O95343 PRELID1P1-202ENST00000567272 903 ntBASIC16.46■□□□□ 0.23
SIX3O95343 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX3O95343 AC139887.3-201ENST00000568585 713 ntBASIC16.46■□□□□ 0.23
SIX3O95343 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC16.46■□□□□ 0.23
SIX3O95343 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX3O95343 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX3O95343 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.46■□□□□ 0.23
SIX3O95343 AC013467.2-201ENST00000605472 835 ntBASIC16.46■□□□□ 0.23
SIX3O95343 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.46■□□□□ 0.23
SIX3O95343 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC16.46■□□□□ 0.23
SIX3O95343 REXO1L6P-202ENST00000619970 1078 ntBASIC16.46■□□□□ 0.23
SIX3O95343 AC004706.3-202ENST00000621574 984 ntBASIC16.46■□□□□ 0.23
SIX3O95343 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
SIX3O95343 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX3O95343 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SIX3O95343 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX3O95343 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.46■□□□□ 0.23
SIX3O95343 AL671710.1-201ENST00000610245 2349 ntBASIC16.46■□□□□ 0.23
SIX3O95343 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.46■□□□□ 0.23
SIX3O95343 ME2P1-201ENST00000426028 1970 ntBASIC16.46■□□□□ 0.22
SIX3O95343 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.22
SIX3O95343 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
SIX3O95343 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.45■□□□□ 0.22
SIX3O95343 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.45■□□□□ 0.22
SIX3O95343 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
SIX3O95343 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.45■□□□□ 0.22
SIX3O95343 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
SIX3O95343 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 PTCHD3P3-201ENST00000403073 906 ntBASIC16.45■□□□□ 0.22
SIX3O95343 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.45■□□□□ 0.22
SIX3O95343 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
SIX3O95343 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.45■□□□□ 0.22
SIX3O95343 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SIX3O95343 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 TOP3BP1-201ENST00000420768 1380 ntBASIC16.45■□□□□ 0.22
SIX3O95343 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 SNX33P1-201ENST00000592116 1762 ntBASIC16.45■□□□□ 0.22
SIX3O95343 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.45■□□□□ 0.22
SIX3O95343 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
SIX3O95343 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SIX3O95343 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
SIX3O95343 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.45■□□□□ 0.22
SIX3O95343 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.45■□□□□ 0.22
SIX3O95343 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.45■□□□□ 0.22
SIX3O95343 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SIX3O95343 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
SIX3O95343 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
SIX3O95343 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX3O95343 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX3O95343 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.44■□□□□ 0.22
SIX3O95343 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
SIX3O95343 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms