Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1BO60663 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1BO60663 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.03
LMX1BO60663 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
LMX1BO60663 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC14.83□□□□□ -0.04
LMX1BO60663 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC14.83□□□□□ -0.04
LMX1BO60663 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 CTNS-203ENST00000399306 803 ntTSL 3 BASIC14.83□□□□□ -0.04
LMX1BO60663 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.83□□□□□ -0.04
LMX1BO60663 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.83□□□□□ -0.04
LMX1BO60663 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.83□□□□□ -0.04
LMX1BO60663 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 AC021087.4-201ENST00000563761 564 ntBASIC14.83□□□□□ -0.04
LMX1BO60663 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC14.83□□□□□ -0.04
LMX1BO60663 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC14.83□□□□□ -0.04
LMX1BO60663 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC14.83□□□□□ -0.04
LMX1BO60663 FAM197Y3-203ENST00000618346 717 ntBASIC14.83□□□□□ -0.04
LMX1BO60663 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
LMX1BO60663 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.04
LMX1BO60663 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC14.83□□□□□ -0.04
LMX1BO60663 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
LMX1BO60663 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC14.83□□□□□ -0.04
LMX1BO60663 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC14.83□□□□□ -0.04
LMX1BO60663 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.83□□□□□ -0.04
LMX1BO60663 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC14.83□□□□□ -0.04
LMX1BO60663 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
LMX1BO60663 AP005117.1-201ENST00000584346 1413 ntBASIC14.83□□□□□ -0.04
LMX1BO60663 AL391256.1-201ENST00000443260 1855 ntBASIC14.82□□□□□ -0.04
LMX1BO60663 CROCCP1-201ENST00000426910 5675 ntBASIC14.82□□□□□ -0.04
LMX1BO60663 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 ALOX12P2-203ENST00000570921 1945 ntBASIC14.82□□□□□ -0.04
LMX1BO60663 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
LMX1BO60663 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.82□□□□□ -0.04
LMX1BO60663 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC14.82□□□□□ -0.04
LMX1BO60663 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC14.82□□□□□ -0.04
LMX1BO60663 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC14.82□□□□□ -0.04
LMX1BO60663 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC14.82□□□□□ -0.04
LMX1BO60663 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 MED15P5-201ENST00000423150 992 ntBASIC14.82□□□□□ -0.04
LMX1BO60663 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC14.82□□□□□ -0.04
LMX1BO60663 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC14.82□□□□□ -0.04
LMX1BO60663 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC14.82□□□□□ -0.04
LMX1BO60663 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC14.82□□□□□ -0.04
LMX1BO60663 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC14.82□□□□□ -0.04
LMX1BO60663 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC14.82□□□□□ -0.04
LMX1BO60663 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC14.82□□□□□ -0.04
LMX1BO60663 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC14.82□□□□□ -0.04
LMX1BO60663 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC14.82□□□□□ -0.04
LMX1BO60663 AC004817.3-201ENST00000602957 2129 ntBASIC14.82□□□□□ -0.04
LMX1BO60663 AC046158.3-201ENST00000624947 2558 ntBASIC14.82□□□□□ -0.04
LMX1BO60663 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
LMX1BO60663 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.82□□□□□ -0.04
LMX1BO60663 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC14.82□□□□□ -0.04
LMX1BO60663 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC14.82□□□□□ -0.04
LMX1BO60663 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
LMX1BO60663 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
LMX1BO60663 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
LMX1BO60663 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC14.82□□□□□ -0.04
LMX1BO60663 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
LMX1BO60663 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
LMX1BO60663 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
LMX1BO60663 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC14.81□□□□□ -0.04
LMX1BO60663 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC14.81□□□□□ -0.04
LMX1BO60663 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.81□□□□□ -0.04
LMX1BO60663 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
LMX1BO60663 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms