Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PHGDHO43175 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PHGDHO43175 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
PHGDHO43175 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PHGDHO43175 PRYP5-201ENST00000451909 266 ntBASIC16.78■□□□□ 0.28
PHGDHO43175 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.78■□□□□ 0.28
PHGDHO43175 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PHGDHO43175 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.78■□□□□ 0.28
PHGDHO43175 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PHGDHO43175 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PHGDHO43175 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
PHGDHO43175 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.78■□□□□ 0.28
PHGDHO43175 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PHGDHO43175 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PHGDHO43175 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
PHGDHO43175 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PHGDHO43175 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
PHGDHO43175 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
PHGDHO43175 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
PHGDHO43175 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PHGDHO43175 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PHGDHO43175 PCDHA1-201ENST00000378133 2726 ntBASIC16.77■□□□□ 0.28
PHGDHO43175 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PHGDHO43175 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PHGDHO43175 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.77■□□□□ 0.28
PHGDHO43175 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PHGDHO43175 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
PHGDHO43175 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
PHGDHO43175 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.77■□□□□ 0.28
PHGDHO43175 MTDHP3-201ENST00000594186 672 ntBASIC16.77■□□□□ 0.28
PHGDHO43175 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
PHGDHO43175 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
PHGDHO43175 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.77■□□□□ 0.28
PHGDHO43175 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PHGDHO43175 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
PHGDHO43175 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.77■□□□□ 0.27
PHGDHO43175 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.77■□□□□ 0.27
PHGDHO43175 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.77■□□□□ 0.27
PHGDHO43175 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
PHGDHO43175 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.77■□□□□ 0.27
PHGDHO43175 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.77■□□□□ 0.27
PHGDHO43175 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
PHGDHO43175 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.77■□□□□ 0.27
PHGDHO43175 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 AL356309.3-201ENST00000624132 1934 ntBASIC16.76■□□□□ 0.27
PHGDHO43175 FUK-207ENST00000571514 3054 ntTSL 2 BASIC16.76■□□□□ 0.27
PHGDHO43175 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.76■□□□□ 0.27
PHGDHO43175 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PHGDHO43175 AL162727.3-201ENST00000635661 2787 ntBASIC16.76■□□□□ 0.27
PHGDHO43175 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.76■□□□□ 0.27
PHGDHO43175 UPK3BP1-201ENST00000428678 509 ntBASIC16.76■□□□□ 0.27
PHGDHO43175 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.76■□□□□ 0.27
PHGDHO43175 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.76■□□□□ 0.27
PHGDHO43175 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.76■□□□□ 0.27
PHGDHO43175 AL139288.1-201ENST00000623748 933 ntBASIC16.76■□□□□ 0.27
PHGDHO43175 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.76■□□□□ 0.27
PHGDHO43175 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
PHGDHO43175 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.76■□□□□ 0.27
PHGDHO43175 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.76■□□□□ 0.27
PHGDHO43175 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.76■□□□□ 0.27
PHGDHO43175 AC006538.1-201ENST00000567905 1585 ntBASIC16.76■□□□□ 0.27
PHGDHO43175 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.76■□□□□ 0.27
PHGDHO43175 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
PHGDHO43175 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.76■□□□□ 0.27
PHGDHO43175 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
PHGDHO43175 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PHGDHO43175 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.75■□□□□ 0.27
PHGDHO43175 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PHGDHO43175 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PHGDHO43175 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
PHGDHO43175 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PHGDHO43175 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
PHGDHO43175 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.75■□□□□ 0.27
PHGDHO43175 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC16.75■□□□□ 0.27
PHGDHO43175 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PHGDHO43175 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PHGDHO43175 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PHGDHO43175 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PHGDHO43175 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
PHGDHO43175 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.75■□□□□ 0.27
PHGDHO43175 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.75■□□□□ 0.27
PHGDHO43175 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.75■□□□□ 0.27
PHGDHO43175 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PHGDHO43175 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
PHGDHO43175 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms