Protein–RNA interactions for Protein: Q9GZS1

POLR1E, DNA-directed RNA polymerase I subunit RPA49, humanhuman

Known RBP Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
POLR1EQ9GZS1 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
POLR1EQ9GZS1 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 SIGLEC29P-201ENST00000599873 1114 ntBASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
POLR1EQ9GZS1 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 FLJ38576-201ENST00000623820 2459 ntBASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 STARD13-205ENST00000439831 945 ntTSL 2 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 KRT18P3-201ENST00000451602 1288 ntBASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 HLA-J-202ENST00000469281 1241 ntBASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 AL031432.2-201ENST00000566714 459 ntBASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 AL928711.1-201ENST00000570165 459 ntBASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 AC023141.13-201ENST00000604991 943 ntBASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 HARS-203ENST00000431330 1774 ntTSL 2 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
POLR1EQ9GZS1 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms