Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 RBSN-204ENST00000449050 903 ntTSL 2 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 KRT16P4-201ENST00000453883 522 ntBASIC12.66□□□□□ -0.38
LINC00477Q96M19 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 KRT18P21-201ENST00000515767 1272 ntBASIC12.66□□□□□ -0.38
LINC00477Q96M19 AP000867.3-201ENST00000524675 377 ntBASIC12.66□□□□□ -0.38
LINC00477Q96M19 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 AL591684.3-201ENST00000605187 298 ntBASIC12.66□□□□□ -0.38
LINC00477Q96M19 CCNC-219ENST00000627680 896 ntTSL 5 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
LINC00477Q96M19 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
LINC00477Q96M19 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 DUX4L17-201ENST00000557360 1267 ntBASIC12.65□□□□□ -0.38
LINC00477Q96M19 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 TERC-201ENST00000602385 541 ntBASIC12.65□□□□□ -0.38
LINC00477Q96M19 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 AP000550.4-202ENST00000639755 178 ntBASIC12.65□□□□□ -0.38
LINC00477Q96M19 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 AC004817.3-201ENST00000602957 2129 ntBASIC12.65□□□□□ -0.38
LINC00477Q96M19 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC12.65□□□□□ -0.38
LINC00477Q96M19 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
LINC00477Q96M19 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 HNRNPRP1-201ENST00000453465 1695 ntBASIC12.64□□□□□ -0.39
LINC00477Q96M19 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 AL513523.2-202ENST00000427283 2040 ntBASIC12.64□□□□□ -0.39
LINC00477Q96M19 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 AMT-206ENST00000458307 1860 ntTSL 2 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC12.64□□□□□ -0.39
LINC00477Q96M19 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
LINC00477Q96M19 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms