Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MIR8072-201ENST00000614241 80 ntBASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 SLC22A20-204ENST00000530038 1673 ntBASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.8■□□□□ 0.76
SMC1BQ8NDV3 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 MIR663B-201ENST00000408361 115 ntBASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 AC126763.1-201ENST00000552015 2118 ntBASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SMC1BQ8NDV3 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 FO681548.1-201ENST00000455617 1132 ntBASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 AC007551.1-201ENST00000457394 519 ntBASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 KRT8P13-201ENST00000463294 1010 ntBASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 AC004461.2-201ENST00000629517 803 ntBASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SMC1BQ8NDV3 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 FTH1-202ENST00000526640 786 ntTSL 2 BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 AC079328.1-201ENST00000560358 952 ntBASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 RRP7BP-205ENST00000566851 833 ntBASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 DERL2-202ENST00000570848 657 ntTSL 5 BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SMC1BQ8NDV3 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.77■□□□□ 0.75
SMC1BQ8NDV3 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
SMC1BQ8NDV3 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC19.77■□□□□ 0.75
SMC1BQ8NDV3 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC19.76■□□□□ 0.75
SMC1BQ8NDV3 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms