Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH1Q08174 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
PCDH1Q08174 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
PCDH1Q08174 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.25■□□□□ 0.19
PCDH1Q08174 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
PCDH1Q08174 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.25■□□□□ 0.19
PCDH1Q08174 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.25■□□□□ 0.19
PCDH1Q08174 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.25■□□□□ 0.19
PCDH1Q08174 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDH1Q08174 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDH1Q08174 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 AL353732.1-201ENST00000569618 1459 ntBASIC16.25■□□□□ 0.19
PCDH1Q08174 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
PCDH1Q08174 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDH1Q08174 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDH1Q08174 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.25■□□□□ 0.19
PCDH1Q08174 AL160237.2-201ENST00000556165 472 ntBASIC16.25■□□□□ 0.19
PCDH1Q08174 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.25■□□□□ 0.19
PCDH1Q08174 AC012640.2-201ENST00000561606 901 ntBASIC16.25■□□□□ 0.19
PCDH1Q08174 BSG-214ENST00000614867 960 ntTSL 3 BASIC16.25■□□□□ 0.19
PCDH1Q08174 FAM215A-202ENST00000632077 792 ntBASIC16.25■□□□□ 0.19
PCDH1Q08174 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC16.25■□□□□ 0.19
PCDH1Q08174 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
PCDH1Q08174 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH1Q08174 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
PCDH1Q08174 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
PCDH1Q08174 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH1Q08174 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
PCDH1Q08174 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
PCDH1Q08174 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH1Q08174 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH1Q08174 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.24■□□□□ 0.19
PCDH1Q08174 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH1Q08174 PCDHA14-201ENST00000506751 2298 ntBASIC16.24■□□□□ 0.19
PCDH1Q08174 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
PCDH1Q08174 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.24■□□□□ 0.19
PCDH1Q08174 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH1Q08174 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 TPM4P1-201ENST00000436100 807 ntBASIC16.24■□□□□ 0.19
PCDH1Q08174 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.24■□□□□ 0.19
PCDH1Q08174 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.24■□□□□ 0.19
PCDH1Q08174 AP002469.2-201ENST00000531724 424 ntBASIC16.24■□□□□ 0.19
PCDH1Q08174 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC16.24■□□□□ 0.19
PCDH1Q08174 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH1Q08174 AC005412.3-201ENST00000580309 715 ntBASIC16.24■□□□□ 0.19
PCDH1Q08174 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH1Q08174 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
PCDH1Q08174 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDH1Q08174 MIR1199-201ENST00000621445 119 ntBASIC16.24■□□□□ 0.19
PCDH1Q08174 AC148477.8-201ENST00000624298 468 ntBASIC16.24■□□□□ 0.19
PCDH1Q08174 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
PCDH1Q08174 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
PCDH1Q08174 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDH1Q08174 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
PCDH1Q08174 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.24■□□□□ 0.19
PCDH1Q08174 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.24■□□□□ 0.19
PCDH1Q08174 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
PCDH1Q08174 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC16.23■□□□□ 0.19
PCDH1Q08174 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
PCDH1Q08174 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
PCDH1Q08174 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms