Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 MIR3619-201ENST00000579667 83 ntBASIC10.23□□□□□ -0.77
HSPG2P98160 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC10.23□□□□□ -0.77
HSPG2P98160 AC097724.1-201ENST00000609581 426 ntBASIC10.23□□□□□ -0.77
HSPG2P98160 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
HSPG2P98160 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC10.23□□□□□ -0.77
HSPG2P98160 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
HSPG2P98160 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC10.23□□□□□ -0.77
HSPG2P98160 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
HSPG2P98160 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
HSPG2P98160 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
HSPG2P98160 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
HSPG2P98160 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC10.23□□□□□ -0.77
HSPG2P98160 ADM-202ENST00000524948 584 ntTSL 2 BASIC10.23□□□□□ -0.77
HSPG2P98160 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC10.23□□□□□ -0.77
HSPG2P98160 RARRES2P5-201ENST00000564013 466 ntBASIC10.23□□□□□ -0.77
HSPG2P98160 AC244669.2-201ENST00000612320 853 ntBASIC10.23□□□□□ -0.77
HSPG2P98160 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
HSPG2P98160 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC10.23□□□□□ -0.77
HSPG2P98160 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
HSPG2P98160 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
HSPG2P98160 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC10.22□□□□□ -0.77
HSPG2P98160 RPS3-201ENST00000278572 907 ntTSL 3 BASIC10.22□□□□□ -0.77
HSPG2P98160 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
HSPG2P98160 SOCS2P1-201ENST00000417727 557 ntBASIC10.22□□□□□ -0.77
HSPG2P98160 AKR7A2P1-201ENST00000460134 915 ntBASIC10.22□□□□□ -0.77
HSPG2P98160 MIR4492-201ENST00000581627 80 ntBASIC10.22□□□□□ -0.77
HSPG2P98160 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC10.22□□□□□ -0.77
HSPG2P98160 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC10.22□□□□□ -0.77
HSPG2P98160 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC10.22□□□□□ -0.77
HSPG2P98160 RN7SL769P-201ENST00000469386 295 ntBASIC10.22□□□□□ -0.77
HSPG2P98160 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
HSPG2P98160 CU634019.7-201ENST00000624153 1185 ntBASIC10.22□□□□□ -0.77
HSPG2P98160 FP236241.2-201ENST00000624906 1185 ntBASIC10.22□□□□□ -0.77
HSPG2P98160 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC10.22□□□□□ -0.77
HSPG2P98160 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC10.22□□□□□ -0.77
HSPG2P98160 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC10.22□□□□□ -0.77
HSPG2P98160 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC10.22□□□□□ -0.77
HSPG2P98160 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC10.22□□□□□ -0.77
HSPG2P98160 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC10.22□□□□□ -0.77
HSPG2P98160 AC138028.6-201ENST00000616106 1482 ntBASIC10.22□□□□□ -0.77
HSPG2P98160 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 AL662890.1-201ENST00000396818 632 ntBASIC10.22□□□□□ -0.77
HSPG2P98160 CNN2P8-201ENST00000421872 913 ntBASIC10.22□□□□□ -0.77
HSPG2P98160 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC10.22□□□□□ -0.77
HSPG2P98160 CLUHP6-201ENST00000580789 941 ntBASIC10.22□□□□□ -0.77
HSPG2P98160 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC10.22□□□□□ -0.77
HSPG2P98160 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC10.22□□□□□ -0.77
HSPG2P98160 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
HSPG2P98160 TOP3BP1-201ENST00000420768 1380 ntBASIC10.21□□□□□ -0.77
HSPG2P98160 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
HSPG2P98160 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
HSPG2P98160 NAA38-207ENST00000576861 556 ntTSL 3 BASIC10.21□□□□□ -0.77
HSPG2P98160 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC10.21□□□□□ -0.77
HSPG2P98160 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC10.21□□□□□ -0.77
HSPG2P98160 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC10.21□□□□□ -0.77
HSPG2P98160 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
HSPG2P98160 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
HSPG2P98160 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC10.21□□□□□ -0.77
HSPG2P98160 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC10.21□□□□□ -0.77
HSPG2P98160 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
HSPG2P98160 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC10.21□□□□□ -0.77
HSPG2P98160 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
HSPG2P98160 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC10.21□□□□□ -0.77
HSPG2P98160 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC10.21□□□□□ -0.77
HSPG2P98160 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC10.21□□□□□ -0.77
HSPG2P98160 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
HSPG2P98160 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
HSPG2P98160 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC10.21□□□□□ -0.77
HSPG2P98160 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
HSPG2P98160 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
HSPG2P98160 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC10.21□□□□□ -0.77
HSPG2P98160 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC10.21□□□□□ -0.77
HSPG2P98160 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC10.21□□□□□ -0.77
HSPG2P98160 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC10.21□□□□□ -0.77
HSPG2P98160 SUOX-214ENST00000551841 906 ntTSL 3 BASIC10.21□□□□□ -0.77
HSPG2P98160 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.77
HSPG2P98160 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC10.21□□□□□ -0.77
HSPG2P98160 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
HSPG2P98160 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms