Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC11.93□□□□□ -0.5
PRKDCP78527 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC11.93□□□□□ -0.5
PRKDCP78527 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC11.93□□□□□ -0.5
PRKDCP78527 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC11.93□□□□□ -0.5
PRKDCP78527 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
PRKDCP78527 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC11.93□□□□□ -0.5
PRKDCP78527 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC11.93□□□□□ -0.5
PRKDCP78527 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC11.93□□□□□ -0.5
PRKDCP78527 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
PRKDCP78527 CDK2AP2P3-201ENST00000422476 372 ntBASIC11.93□□□□□ -0.5
PRKDCP78527 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
PRKDCP78527 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC11.93□□□□□ -0.5
PRKDCP78527 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC11.93□□□□□ -0.5
PRKDCP78527 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 CLK3P2-201ENST00000427566 1453 ntBASIC11.93□□□□□ -0.5
PRKDCP78527 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
PRKDCP78527 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC11.93□□□□□ -0.5
PRKDCP78527 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC11.93□□□□□ -0.5
PRKDCP78527 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC11.93□□□□□ -0.5
PRKDCP78527 RPL13AP19-201ENST00000434320 584 ntBASIC11.93□□□□□ -0.5
PRKDCP78527 AC069218.1-201ENST00000435269 762 ntBASIC11.93□□□□□ -0.5
PRKDCP78527 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC11.93□□□□□ -0.5
PRKDCP78527 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC11.93□□□□□ -0.5
PRKDCP78527 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
PRKDCP78527 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC11.93□□□□□ -0.5
PRKDCP78527 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC11.93□□□□□ -0.5
PRKDCP78527 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 LINC00304-203ENST00000565008 1864 ntBASIC11.93□□□□□ -0.5
PRKDCP78527 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
PRKDCP78527 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PRKDCP78527 KRT8P37-201ENST00000451609 1420 ntBASIC11.93□□□□□ -0.5
PRKDCP78527 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 YBX1P6-201ENST00000442962 1002 ntBASIC11.92□□□□□ -0.5
PRKDCP78527 TDH-203ENST00000531764 1110 ntBASIC11.92□□□□□ -0.5
PRKDCP78527 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC11.92□□□□□ -0.5
PRKDCP78527 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
PRKDCP78527 SLC9A3P2-201ENST00000447821 2021 ntBASIC11.92□□□□□ -0.5
PRKDCP78527 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
PRKDCP78527 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC11.92□□□□□ -0.5
PRKDCP78527 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 SNX21-203ENST00000372541 771 ntTSL 2 BASIC11.92□□□□□ -0.5
PRKDCP78527 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 SOCS2P1-201ENST00000417727 557 ntBASIC11.92□□□□□ -0.5
PRKDCP78527 AL591846.1-201ENST00000451736 433 ntBASIC11.92□□□□□ -0.5
PRKDCP78527 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
PRKDCP78527 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC11.92□□□□□ -0.5
PRKDCP78527 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC11.92□□□□□ -0.5
PRKDCP78527 PRKN-211ENST00000615065 261 ntTSL 5 BASIC11.92□□□□□ -0.5
PRKDCP78527 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
PRKDCP78527 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC11.92□□□□□ -0.5
PRKDCP78527 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 FOS-202ENST00000535987 1402 ntTSL 2 BASIC11.92□□□□□ -0.5
PRKDCP78527 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 APOA1-205ENST00000375329 927 ntTSL 2 BASIC11.92□□□□□ -0.5
PRKDCP78527 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 RARRES2P5-201ENST00000564013 466 ntBASIC11.92□□□□□ -0.5
PRKDCP78527 AC061975.2-201ENST00000581722 295 ntBASIC11.92□□□□□ -0.5
PRKDCP78527 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC11.92□□□□□ -0.5
PRKDCP78527 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC11.92□□□□□ -0.5
PRKDCP78527 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC11.92□□□□□ -0.5
PRKDCP78527 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC11.92□□□□□ -0.5
PRKDCP78527 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms