Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AC104692.2-201ENST00000603054 253 ntBASIC17.54■□□□□ 0.4
CDH6P55285 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH6P55285 MIR1199-201ENST00000621445 119 ntBASIC17.54■□□□□ 0.4
CDH6P55285 AC148477.8-201ENST00000624298 468 ntBASIC17.54■□□□□ 0.4
CDH6P55285 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
CDH6P55285 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH6P55285 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH6P55285 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH6P55285 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH6P55285 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH6P55285 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH6P55285 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH6P55285 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH6P55285 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CDH6P55285 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH6P55285 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH6P55285 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CDH6P55285 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CDH6P55285 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
CDH6P55285 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.54■□□□□ 0.4
CDH6P55285 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CDH6P55285 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC17.53■□□□□ 0.4
CDH6P55285 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC17.53■□□□□ 0.4
CDH6P55285 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.53■□□□□ 0.4
CDH6P55285 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC17.53■□□□□ 0.4
CDH6P55285 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC17.53■□□□□ 0.4
CDH6P55285 RPS2P28-201ENST00000314255 741 ntBASIC17.53■□□□□ 0.4
CDH6P55285 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.53■□□□□ 0.4
CDH6P55285 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.53■□□□□ 0.4
CDH6P55285 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.53■□□□□ 0.4
CDH6P55285 AP002469.2-201ENST00000531724 424 ntBASIC17.53■□□□□ 0.4
CDH6P55285 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.53■□□□□ 0.4
CDH6P55285 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.53■□□□□ 0.4
CDH6P55285 ETFA-208ENST00000559602 792 ntTSL 3 BASIC17.53■□□□□ 0.4
CDH6P55285 AC012640.2-201ENST00000561606 901 ntBASIC17.53■□□□□ 0.4
CDH6P55285 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.53■□□□□ 0.4
CDH6P55285 AC013467.2-201ENST00000605472 835 ntBASIC17.53■□□□□ 0.4
CDH6P55285 REXO1L3P-201ENST00000622202 1288 ntBASIC17.53■□□□□ 0.4
CDH6P55285 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CDH6P55285 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC17.53■□□□□ 0.4
CDH6P55285 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CDH6P55285 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.53■□□□□ 0.4
CDH6P55285 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CDH6P55285 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDH6P55285 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC17.52■□□□□ 0.4
CDH6P55285 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.52■□□□□ 0.4
CDH6P55285 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH6P55285 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH6P55285 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.52■□□□□ 0.4
CDH6P55285 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC17.52■□□□□ 0.4
CDH6P55285 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
CDH6P55285 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH6P55285 AP002414.3-201ENST00000589352 1468 ntBASIC17.52■□□□□ 0.4
CDH6P55285 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.52■□□□□ 0.4
CDH6P55285 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.52■□□□□ 0.4
CDH6P55285 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH6P55285 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC17.52■□□□□ 0.4
CDH6P55285 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.52■□□□□ 0.4
CDH6P55285 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.52■□□□□ 0.4
CDH6P55285 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.52■□□□□ 0.4
CDH6P55285 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.52■□□□□ 0.4
CDH6P55285 AL356488.2-201ENST00000602755 427 ntBASIC17.52■□□□□ 0.4
CDH6P55285 GGTLC5P-201ENST00000617623 998 ntBASIC17.52■□□□□ 0.4
CDH6P55285 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
CDH6P55285 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
CDH6P55285 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDH6P55285 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
CDH6P55285 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDH6P55285 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDH6P55285 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
CDH6P55285 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.52■□□□□ 0.39
CDH6P55285 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.39
CDH6P55285 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.52■□□□□ 0.39
CDH6P55285 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
CDH6P55285 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.52■□□□□ 0.39
CDH6P55285 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.51■□□□□ 0.39
CDH6P55285 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.51■□□□□ 0.39
CDH6P55285 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CDH6P55285 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.51■□□□□ 0.39
CDH6P55285 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
CDH6P55285 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CDH6P55285 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH6P55285 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH6P55285 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms