Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC133963.1-201ENST00000504166 1679 ntBASIC17.8■□□□□ 0.44
LIG3P49916 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.8■□□□□ 0.44
LIG3P49916 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIG3P49916 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIG3P49916 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIG3P49916 C1R-202ENST00000536053 2347 ntTSL 2 BASIC17.8■□□□□ 0.44
LIG3P49916 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
LIG3P49916 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
LIG3P49916 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.79■□□□□ 0.44
LIG3P49916 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LIG3P49916 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.79■□□□□ 0.44
LIG3P49916 SLC9A7P1-201ENST00000554295 3311 ntBASIC17.79■□□□□ 0.44
LIG3P49916 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
LIG3P49916 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.79■□□□□ 0.44
LIG3P49916 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
LIG3P49916 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.79■□□□□ 0.44
LIG3P49916 AC026396.1-201ENST00000419388 421 ntBASIC17.79■□□□□ 0.44
LIG3P49916 AC096633.1-201ENST00000422446 749 ntBASIC17.79■□□□□ 0.44
LIG3P49916 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
LIG3P49916 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC17.79■□□□□ 0.44
LIG3P49916 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC17.79■□□□□ 0.44
LIG3P49916 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.79■□□□□ 0.44
LIG3P49916 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.79■□□□□ 0.44
LIG3P49916 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.79■□□□□ 0.44
LIG3P49916 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.79■□□□□ 0.44
LIG3P49916 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.79■□□□□ 0.44
LIG3P49916 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC17.79■□□□□ 0.44
LIG3P49916 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC17.79■□□□□ 0.44
LIG3P49916 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
LIG3P49916 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.79■□□□□ 0.44
LIG3P49916 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIG3P49916 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
LIG3P49916 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIG3P49916 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LIG3P49916 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC17.78■□□□□ 0.44
LIG3P49916 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIG3P49916 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.78■□□□□ 0.44
LIG3P49916 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIG3P49916 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIG3P49916 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIG3P49916 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.78■□□□□ 0.44
LIG3P49916 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIG3P49916 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.78■□□□□ 0.44
LIG3P49916 SAPCD2P3-201ENST00000455031 850 ntBASIC17.78■□□□□ 0.44
LIG3P49916 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIG3P49916 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIG3P49916 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
LIG3P49916 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
LIG3P49916 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.78■□□□□ 0.44
LIG3P49916 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.78■□□□□ 0.44
LIG3P49916 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.78■□□□□ 0.44
LIG3P49916 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.78■□□□□ 0.44
LIG3P49916 AL031008.1-201ENST00000619963 541 ntBASIC17.78■□□□□ 0.44
LIG3P49916 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIG3P49916 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC17.78■□□□□ 0.44
LIG3P49916 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LIG3P49916 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
LIG3P49916 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC17.78■□□□□ 0.44
LIG3P49916 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.78■□□□□ 0.44
LIG3P49916 AC010460.3-201ENST00000511359 1579 ntBASIC17.78■□□□□ 0.44
LIG3P49916 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.78■□□□□ 0.44
LIG3P49916 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIG3P49916 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIG3P49916 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIG3P49916 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
LIG3P49916 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
LIG3P49916 AL513523.2-202ENST00000427283 2040 ntBASIC17.77■□□□□ 0.44
LIG3P49916 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
LIG3P49916 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
LIG3P49916 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC17.77■□□□□ 0.44
LIG3P49916 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
LIG3P49916 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.77■□□□□ 0.44
LIG3P49916 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms