Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HTTP42858 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
HTTP42858 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HTTP42858 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
HTTP42858 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
HTTP42858 NSL1-201ENST00000366976 722 ntTSL 2 BASIC18.62■□□□□ 0.57
HTTP42858 AC005229.1-201ENST00000392885 409 ntBASIC18.62■□□□□ 0.57
HTTP42858 RHOA-206ENST00000454011 889 ntTSL 2 BASIC18.62■□□□□ 0.57
HTTP42858 FO681548.1-201ENST00000455617 1132 ntBASIC18.62■□□□□ 0.57
HTTP42858 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
HTTP42858 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.62■□□□□ 0.57
HTTP42858 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
HTTP42858 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC18.61■□□□□ 0.57
HTTP42858 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
HTTP42858 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
HTTP42858 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 FLJ13224-201ENST00000313737 1514 ntBASIC18.61■□□□□ 0.57
HTTP42858 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC18.61■□□□□ 0.57
HTTP42858 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
HTTP42858 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HTTP42858 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC18.61■□□□□ 0.57
HTTP42858 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC18.61■□□□□ 0.57
HTTP42858 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC18.61■□□□□ 0.57
HTTP42858 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
HTTP42858 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HTTP42858 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC18.6■□□□□ 0.57
HTTP42858 IGHJ2P-201ENST00000454480 60 ntBASIC18.6■□□□□ 0.57
HTTP42858 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC18.6■□□□□ 0.57
HTTP42858 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.6■□□□□ 0.57
HTTP42858 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC18.6■□□□□ 0.57
HTTP42858 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.6■□□□□ 0.57
HTTP42858 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HTTP42858 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
HTTP42858 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.6■□□□□ 0.57
HTTP42858 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HTTP42858 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.6■□□□□ 0.57
HTTP42858 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC18.6■□□□□ 0.57
HTTP42858 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC18.6■□□□□ 0.57
HTTP42858 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC18.6■□□□□ 0.57
HTTP42858 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC18.6■□□□□ 0.57
HTTP42858 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC18.6■□□□□ 0.57
HTTP42858 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC18.6■□□□□ 0.57
HTTP42858 AC004461.2-201ENST00000629517 803 ntBASIC18.6■□□□□ 0.57
HTTP42858 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HTTP42858 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HTTP42858 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HTTP42858 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HTTP42858 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HTTP42858 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.6■□□□□ 0.57
HTTP42858 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
HTTP42858 KRT18P34-201ENST00000488218 1270 ntBASIC18.6■□□□□ 0.57
HTTP42858 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC18.6■□□□□ 0.57
HTTP42858 RN7SL219P-201ENST00000582872 296 ntBASIC18.6■□□□□ 0.57
HTTP42858 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HTTP42858 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HTTP42858 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HTTP42858 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.6■□□□□ 0.57
HTTP42858 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.59■□□□□ 0.57
HTTP42858 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC18.59■□□□□ 0.57
HTTP42858 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC18.59■□□□□ 0.57
HTTP42858 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC18.59■□□□□ 0.57
HTTP42858 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC18.59■□□□□ 0.57
HTTP42858 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC18.59■□□□□ 0.57
HTTP42858 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC18.59■□□□□ 0.57
HTTP42858 MIR4492-201ENST00000581627 80 ntBASIC18.59■□□□□ 0.57
HTTP42858 AC233724.13-201ENST00000598383 410 ntBASIC18.59■□□□□ 0.57
HTTP42858 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 MEP1AP4-201ENST00000423244 1087 ntBASIC18.59■□□□□ 0.57
HTTP42858 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.59■□□□□ 0.57
HTTP42858 RRP7BP-205ENST00000566851 833 ntBASIC18.59■□□□□ 0.57
HTTP42858 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HTTP42858 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms