Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
SOX3P41225 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
SOX3P41225 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC15.9■□□□□ 0.14
SOX3P41225 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
SOX3P41225 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.9■□□□□ 0.14
SOX3P41225 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 POLD2P1-201ENST00000511220 997 ntBASIC15.9■□□□□ 0.14
SOX3P41225 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
SOX3P41225 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.9■□□□□ 0.14
SOX3P41225 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC15.9■□□□□ 0.14
SOX3P41225 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
SOX3P41225 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC15.9■□□□□ 0.14
SOX3P41225 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.9■□□□□ 0.14
SOX3P41225 AL805961.1-202ENST00000641562 540 ntBASIC15.9■□□□□ 0.14
SOX3P41225 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SOX3P41225 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SOX3P41225 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC15.9■□□□□ 0.14
SOX3P41225 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.9■□□□□ 0.14
SOX3P41225 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
SOX3P41225 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SOX3P41225 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
SOX3P41225 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.89■□□□□ 0.13
SOX3P41225 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
SOX3P41225 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.89■□□□□ 0.13
SOX3P41225 PTCHD3P3-201ENST00000403073 906 ntBASIC15.89■□□□□ 0.13
SOX3P41225 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.89■□□□□ 0.13
SOX3P41225 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
SOX3P41225 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC15.89■□□□□ 0.13
SOX3P41225 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.89■□□□□ 0.13
SOX3P41225 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
SOX3P41225 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
SOX3P41225 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC15.89■□□□□ 0.13
SOX3P41225 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
SOX3P41225 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC15.89■□□□□ 0.13
SOX3P41225 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.89■□□□□ 0.13
SOX3P41225 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC15.89■□□□□ 0.13
SOX3P41225 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.89■□□□□ 0.13
SOX3P41225 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.89■□□□□ 0.13
SOX3P41225 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
SOX3P41225 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
SOX3P41225 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
SOX3P41225 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.88■□□□□ 0.13
SOX3P41225 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.88■□□□□ 0.13
SOX3P41225 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
SOX3P41225 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
SOX3P41225 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.88■□□□□ 0.13
SOX3P41225 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.88■□□□□ 0.13
SOX3P41225 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
SOX3P41225 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
SOX3P41225 MED15P5-201ENST00000423150 992 ntBASIC15.88■□□□□ 0.13
SOX3P41225 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
SOX3P41225 AC108073.2-201ENST00000464002 357 ntBASIC15.88■□□□□ 0.13
SOX3P41225 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.88■□□□□ 0.13
SOX3P41225 AC140113.2-201ENST00000604370 208 ntBASIC15.88■□□□□ 0.13
SOX3P41225 AC008667.4-201ENST00000607370 168 ntBASIC15.88■□□□□ 0.13
SOX3P41225 AC027601.4-201ENST00000611259 610 ntBASIC15.88■□□□□ 0.13
SOX3P41225 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
SOX3P41225 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.88■□□□□ 0.13
SOX3P41225 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms