Protein–RNA interactions for Protein: P35523

CLCN1, Chloride channel protein 1, humanhuman

Predictions only

Length 988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN1P35523 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.21■□□□□ 0.67
CLCN1P35523 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLCN1P35523 AC005089.1-201ENST00000619486 2241 ntBASIC19.21■□□□□ 0.67
CLCN1P35523 AC023157.3-201ENST00000619086 2088 ntBASIC19.21■□□□□ 0.67
CLCN1P35523 ALOX12P2-203ENST00000570921 1945 ntBASIC19.21■□□□□ 0.67
CLCN1P35523 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CLCN1P35523 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CLCN1P35523 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CLCN1P35523 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC19.21■□□□□ 0.67
CLCN1P35523 AC022898.2-201ENST00000616822 1312 ntBASIC19.21■□□□□ 0.67
CLCN1P35523 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CLCN1P35523 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CLCN1P35523 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
CLCN1P35523 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 PPT1-215ENST00000641471 2368 ntBASIC19.2■□□□□ 0.66
CLCN1P35523 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CLCN1P35523 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.2■□□□□ 0.66
CLCN1P35523 LINC01311-201ENST00000565162 1445 ntBASIC19.2■□□□□ 0.66
CLCN1P35523 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.2■□□□□ 0.66
CLCN1P35523 IGHGP-201ENST00000390555 1178 ntBASIC19.2■□□□□ 0.66
CLCN1P35523 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC19.2■□□□□ 0.66
CLCN1P35523 KRT18P65-201ENST00000439811 1286 ntBASIC19.2■□□□□ 0.66
CLCN1P35523 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.2■□□□□ 0.66
CLCN1P35523 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC19.2■□□□□ 0.66
CLCN1P35523 AC022616.7-201ENST00000525383 220 ntBASIC19.2■□□□□ 0.66
CLCN1P35523 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.2■□□□□ 0.66
CLCN1P35523 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.2■□□□□ 0.66
CLCN1P35523 AL603832.2-201ENST00000566195 2125 ntBASIC19.2■□□□□ 0.66
CLCN1P35523 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC19.2■□□□□ 0.66
CLCN1P35523 AC083849.1-201ENST00000615227 514 ntBASIC19.2■□□□□ 0.66
CLCN1P35523 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC19.2■□□□□ 0.66
CLCN1P35523 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC19.2■□□□□ 0.66
CLCN1P35523 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CLCN1P35523 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC19.19■□□□□ 0.66
CLCN1P35523 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC19.19■□□□□ 0.66
CLCN1P35523 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.19■□□□□ 0.66
CLCN1P35523 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 SLC25A1P3-201ENST00000395415 828 ntBASIC19.19■□□□□ 0.66
CLCN1P35523 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 TMPOP1-202ENST00000424642 1267 ntBASIC19.19■□□□□ 0.66
CLCN1P35523 AC092647.4-201ENST00000457211 535 ntBASIC19.19■□□□□ 0.66
CLCN1P35523 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
CLCN1P35523 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.19■□□□□ 0.66
CLCN1P35523 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.19■□□□□ 0.66
CLCN1P35523 ZNF444P1-201ENST00000559497 298 ntBASIC19.19■□□□□ 0.66
CLCN1P35523 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC19.19■□□□□ 0.66
CLCN1P35523 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.19■□□□□ 0.66
CLCN1P35523 HLA-A-202ENST00000376806 1854 ntBASIC19.19■□□□□ 0.66
CLCN1P35523 AL137784.3-201ENST00000623858 2288 ntBASIC19.19■□□□□ 0.66
CLCN1P35523 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CLCN1P35523 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CLCN1P35523 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN1P35523 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
CLCN1P35523 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CLCN1P35523 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.18■□□□□ 0.66
CLCN1P35523 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN1P35523 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC19.18■□□□□ 0.66
CLCN1P35523 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN1P35523 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC19.18■□□□□ 0.66
CLCN1P35523 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.18■□□□□ 0.66
CLCN1P35523 AP003733.1-201ENST00000491725 852 ntBASIC19.18■□□□□ 0.66
CLCN1P35523 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN1P35523 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.18■□□□□ 0.66
CLCN1P35523 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.18■□□□□ 0.66
CLCN1P35523 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.18■□□□□ 0.66
CLCN1P35523 GXYLT1P4-201ENST00000613576 1192 ntBASIC19.18■□□□□ 0.66
CLCN1P35523 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.18■□□□□ 0.66
CLCN1P35523 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC19.18■□□□□ 0.66
CLCN1P35523 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CLCN1P35523 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.18■□□□□ 0.66
CLCN1P35523 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms