Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A5P29400 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A5P29400 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC19.88■□□□□ 0.77
COL4A5P29400 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC19.88■□□□□ 0.77
COL4A5P29400 AP005482.1-201ENST00000563722 1273 ntBASIC19.88■□□□□ 0.77
COL4A5P29400 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A5P29400 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A5P29400 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A5P29400 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A5P29400 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL4A5P29400 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A5P29400 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A5P29400 AC092053.1-201ENST00000605787 1936 ntBASIC19.88■□□□□ 0.77
COL4A5P29400 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC19.88■□□□□ 0.77
COL4A5P29400 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A5P29400 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A5P29400 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
COL4A5P29400 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
COL4A5P29400 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
COL4A5P29400 COMP-202ENST00000425807 2292 ntTSL 2 BASIC19.88■□□□□ 0.77
COL4A5P29400 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
COL4A5P29400 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
COL4A5P29400 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC19.87■□□□□ 0.77
COL4A5P29400 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC19.87■□□□□ 0.77
COL4A5P29400 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A5P29400 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
COL4A5P29400 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC19.87■□□□□ 0.77
COL4A5P29400 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A5P29400 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A5P29400 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC19.87■□□□□ 0.77
COL4A5P29400 AC084346.2-201ENST00000607097 949 ntBASIC19.87■□□□□ 0.77
COL4A5P29400 MIR8072-201ENST00000614241 80 ntBASIC19.87■□□□□ 0.77
COL4A5P29400 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A5P29400 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.87■□□□□ 0.77
COL4A5P29400 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A5P29400 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A5P29400 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A5P29400 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A5P29400 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A5P29400 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A5P29400 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC19.87■□□□□ 0.77
COL4A5P29400 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
COL4A5P29400 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A5P29400 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A5P29400 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A5P29400 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A5P29400 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC19.87■□□□□ 0.77
COL4A5P29400 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
COL4A5P29400 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
COL4A5P29400 AC008764.6-201ENST00000595909 2069 ntBASIC19.86■□□□□ 0.77
COL4A5P29400 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
COL4A5P29400 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
COL4A5P29400 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
COL4A5P29400 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.86■□□□□ 0.77
COL4A5P29400 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.86■□□□□ 0.77
COL4A5P29400 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A5P29400 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
COL4A5P29400 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A5P29400 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A5P29400 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC19.86■□□□□ 0.77
COL4A5P29400 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A5P29400 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC19.86■□□□□ 0.77
COL4A5P29400 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
COL4A5P29400 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A5P29400 AC124947.2-201ENST00000547118 1133 ntBASIC19.86■□□□□ 0.77
COL4A5P29400 AL391069.4-201ENST00000609583 481 ntBASIC19.86■□□□□ 0.77
COL4A5P29400 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A5P29400 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
COL4A5P29400 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.86■□□□□ 0.77
COL4A5P29400 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A5P29400 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.86■□□□□ 0.77
COL4A5P29400 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
COL4A5P29400 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
COL4A5P29400 AC135050.7-201ENST00000624508 2218 ntBASIC19.86■□□□□ 0.77
COL4A5P29400 CDC14C-201ENST00000428251 1719 ntBASIC19.85■□□□□ 0.77
COL4A5P29400 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.85■□□□□ 0.77
COL4A5P29400 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
COL4A5P29400 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A5P29400 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
COL4A5P29400 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC19.85■□□□□ 0.77
COL4A5P29400 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.85■□□□□ 0.77
COL4A5P29400 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A5P29400 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC19.85■□□□□ 0.77
COL4A5P29400 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC19.85■□□□□ 0.77
COL4A5P29400 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A5P29400 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC19.85■□□□□ 0.77
COL4A5P29400 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC19.85■□□□□ 0.77
COL4A5P29400 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC19.85■□□□□ 0.77
COL4A5P29400 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC19.85■□□□□ 0.77
COL4A5P29400 AC010319.3-201ENST00000597028 470 ntBASIC19.85■□□□□ 0.77
COL4A5P29400 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC19.85■□□□□ 0.77
COL4A5P29400 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC19.85■□□□□ 0.77
COL4A5P29400 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A5P29400 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A5P29400 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A5P29400 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A5P29400 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A5P29400 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A5P29400 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
COL4A5P29400 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms