Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
HMGA1P17096 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.34■□□□□ 0.37
HMGA1P17096 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGA1P17096 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.34■□□□□ 0.37
HMGA1P17096 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGA1P17096 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC17.34■□□□□ 0.37
HMGA1P17096 TREML5P-201ENST00000421694 576 ntBASIC17.34■□□□□ 0.37
HMGA1P17096 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HMGA1P17096 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.34■□□□□ 0.37
HMGA1P17096 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
HMGA1P17096 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGA1P17096 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.34■□□□□ 0.37
HMGA1P17096 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
HMGA1P17096 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGA1P17096 AL512652.2-201ENST00000625156 1716 ntBASIC17.34■□□□□ 0.37
HMGA1P17096 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
HMGA1P17096 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
HMGA1P17096 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
HMGA1P17096 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGA1P17096 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HMGA1P17096 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGA1P17096 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
HMGA1P17096 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.33■□□□□ 0.37
HMGA1P17096 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGA1P17096 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
HMGA1P17096 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
HMGA1P17096 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGA1P17096 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.33■□□□□ 0.37
HMGA1P17096 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.33■□□□□ 0.37
HMGA1P17096 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
HMGA1P17096 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGA1P17096 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.37
HMGA1P17096 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGA1P17096 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGA1P17096 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGA1P17096 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGA1P17096 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGA1P17096 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGA1P17096 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGA1P17096 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGA1P17096 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
HMGA1P17096 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.33■□□□□ 0.36
HMGA1P17096 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGA1P17096 RNA5SP421-201ENST00000516864 134 ntBASIC17.33■□□□□ 0.36
HMGA1P17096 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGA1P17096 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.33■□□□□ 0.36
HMGA1P17096 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGA1P17096 COQ4-205ENST00000609948 956 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGA1P17096 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
HMGA1P17096 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGA1P17096 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGA1P17096 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGA1P17096 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
HMGA1P17096 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGA1P17096 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
HMGA1P17096 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.33■□□□□ 0.36
HMGA1P17096 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC17.33■□□□□ 0.36
HMGA1P17096 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGA1P17096 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.32■□□□□ 0.36
HMGA1P17096 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
HMGA1P17096 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
HMGA1P17096 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGA1P17096 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.32■□□□□ 0.36
HMGA1P17096 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.32■□□□□ 0.36
HMGA1P17096 AC097493.3-201ENST00000509725 367 ntBASIC17.32■□□□□ 0.36
HMGA1P17096 AP002490.2-201ENST00000524791 560 ntBASIC17.32■□□□□ 0.36
HMGA1P17096 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.32■□□□□ 0.36
HMGA1P17096 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.32■□□□□ 0.36
HMGA1P17096 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.32■□□□□ 0.36
HMGA1P17096 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGA1P17096 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.32■□□□□ 0.36
HMGA1P17096 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.32■□□□□ 0.36
HMGA1P17096 AL158211.3-201ENST00000607385 239 ntBASIC17.32■□□□□ 0.36
HMGA1P17096 AC018529.1-201ENST00000613063 361 ntBASIC17.32■□□□□ 0.36
HMGA1P17096 AJ011932.1-201ENST00000621707 465 ntBASIC17.32■□□□□ 0.36
HMGA1P17096 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC17.32■□□□□ 0.36
HMGA1P17096 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
HMGA1P17096 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.31■□□□□ 0.36
HMGA1P17096 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.31■□□□□ 0.36
HMGA1P17096 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
HMGA1P17096 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms