Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.85■□□□□ 0.61
MSH4O15457 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.85■□□□□ 0.61
MSH4O15457 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.85■□□□□ 0.61
MSH4O15457 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.85■□□□□ 0.61
MSH4O15457 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.85■□□□□ 0.61
MSH4O15457 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
MSH4O15457 AL512652.2-201ENST00000625156 1716 ntBASIC18.85■□□□□ 0.61
MSH4O15457 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
MSH4O15457 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
MSH4O15457 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC18.84■□□□□ 0.61
MSH4O15457 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.84■□□□□ 0.61
MSH4O15457 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
MSH4O15457 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC18.84■□□□□ 0.61
MSH4O15457 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
MSH4O15457 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
MSH4O15457 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.84■□□□□ 0.61
MSH4O15457 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.84■□□□□ 0.61
MSH4O15457 AP006288.1-201ENST00000446065 395 ntBASIC18.84■□□□□ 0.61
MSH4O15457 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.84■□□□□ 0.61
MSH4O15457 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.84■□□□□ 0.61
MSH4O15457 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC18.84■□□□□ 0.61
MSH4O15457 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.84■□□□□ 0.61
MSH4O15457 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC18.84■□□□□ 0.61
MSH4O15457 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
MSH4O15457 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.84■□□□□ 0.61
MSH4O15457 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.84■□□□□ 0.61
MSH4O15457 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
MSH4O15457 AL161645.1-201ENST00000622716 1255 ntBASIC18.84■□□□□ 0.61
MSH4O15457 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
MSH4O15457 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.84■□□□□ 0.61
MSH4O15457 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
MSH4O15457 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
MSH4O15457 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.83■□□□□ 0.61
MSH4O15457 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC18.83■□□□□ 0.61
MSH4O15457 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
MSH4O15457 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
MSH4O15457 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
MSH4O15457 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
MSH4O15457 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC18.83■□□□□ 0.61
MSH4O15457 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
MSH4O15457 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
MSH4O15457 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
MSH4O15457 AD000864.1-201ENST00000624076 2295 ntBASIC18.83■□□□□ 0.61
MSH4O15457 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
MSH4O15457 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.83■□□□□ 0.6
MSH4O15457 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
MSH4O15457 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.83■□□□□ 0.6
MSH4O15457 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.83■□□□□ 0.6
MSH4O15457 RPS8P6-201ENST00000426177 609 ntBASIC18.83■□□□□ 0.6
MSH4O15457 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC18.83■□□□□ 0.6
MSH4O15457 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.83■□□□□ 0.6
MSH4O15457 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
MSH4O15457 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.83■□□□□ 0.6
MSH4O15457 AC021097.1-201ENST00000607902 574 ntBASIC18.83■□□□□ 0.6
MSH4O15457 AC105339.1-204ENST00000636249 355 ntBASIC18.83■□□□□ 0.6
MSH4O15457 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
MSH4O15457 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
MSH4O15457 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
MSH4O15457 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.83■□□□□ 0.6
MSH4O15457 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
MSH4O15457 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
MSH4O15457 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.82■□□□□ 0.6
MSH4O15457 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSH4O15457 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
MSH4O15457 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms