Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.44■□□□□ 0.22
HDAC3O15379 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.44■□□□□ 0.22
HDAC3O15379 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
HDAC3O15379 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC16.44■□□□□ 0.22
HDAC3O15379 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HDAC3O15379 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDAC3O15379 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC16.43■□□□□ 0.22
HDAC3O15379 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
HDAC3O15379 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.43■□□□□ 0.22
HDAC3O15379 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.43■□□□□ 0.22
HDAC3O15379 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.43■□□□□ 0.22
HDAC3O15379 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.43■□□□□ 0.22
HDAC3O15379 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC16.43■□□□□ 0.22
HDAC3O15379 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.43■□□□□ 0.22
HDAC3O15379 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.43■□□□□ 0.22
HDAC3O15379 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
HDAC3O15379 AP005901.3-202ENST00000581653 237 ntBASIC16.43■□□□□ 0.22
HDAC3O15379 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
HDAC3O15379 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
HDAC3O15379 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.43■□□□□ 0.22
HDAC3O15379 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.43■□□□□ 0.22
HDAC3O15379 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.43■□□□□ 0.22
HDAC3O15379 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
HDAC3O15379 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.43■□□□□ 0.22
HDAC3O15379 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC16.43■□□□□ 0.22
HDAC3O15379 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 INTS4P1-201ENST00000438455 1935 ntBASIC16.43■□□□□ 0.22
HDAC3O15379 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.43■□□□□ 0.22
HDAC3O15379 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDAC3O15379 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC3O15379 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC3O15379 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC3O15379 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
HDAC3O15379 AC097637.2-201ENST00000624096 1997 ntBASIC16.42■□□□□ 0.22
HDAC3O15379 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
HDAC3O15379 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.42■□□□□ 0.22
HDAC3O15379 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 AC103702.1-201ENST00000548801 2630 ntBASIC16.42■□□□□ 0.22
HDAC3O15379 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.42■□□□□ 0.22
HDAC3O15379 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC3O15379 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC3O15379 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC3O15379 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC3O15379 DAP-202ENST00000432074 1048 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC3O15379 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.42■□□□□ 0.22
HDAC3O15379 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.42■□□□□ 0.22
HDAC3O15379 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.42■□□□□ 0.22
HDAC3O15379 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC16.42■□□□□ 0.22
HDAC3O15379 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.42■□□□□ 0.22
HDAC3O15379 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC3O15379 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
HDAC3O15379 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
HDAC3O15379 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC3O15379 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.42■□□□□ 0.22
HDAC3O15379 GGT3P-204ENST00000453783 1664 ntBASIC16.42■□□□□ 0.22
HDAC3O15379 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
HDAC3O15379 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HDAC3O15379 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
HDAC3O15379 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms