Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC13.62□□□□□ -0.23
HMGB3O15347 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC13.62□□□□□ -0.23
HMGB3O15347 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
HMGB3O15347 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
HMGB3O15347 TBL1X-203ENST00000407597 5596 ntTSL 2 BASIC13.62□□□□□ -0.23
HMGB3O15347 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
HMGB3O15347 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
HMGB3O15347 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC13.62□□□□□ -0.23
HMGB3O15347 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.62□□□□□ -0.23
HMGB3O15347 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC13.62□□□□□ -0.23
HMGB3O15347 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC13.62□□□□□ -0.23
HMGB3O15347 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC13.61□□□□□ -0.23
HMGB3O15347 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
HMGB3O15347 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC13.61□□□□□ -0.23
HMGB3O15347 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 AC092053.3-201ENST00000641308 4975 ntBASIC13.61□□□□□ -0.23
HMGB3O15347 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
HMGB3O15347 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC13.61□□□□□ -0.23
HMGB3O15347 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC13.61□□□□□ -0.23
HMGB3O15347 SEC1P-202ENST00000473944 940 ntBASIC13.61□□□□□ -0.23
HMGB3O15347 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC13.61□□□□□ -0.23
HMGB3O15347 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
HMGB3O15347 GRAMD4P8-201ENST00000605465 1115 ntBASIC13.61□□□□□ -0.23
HMGB3O15347 AL023803.3-201ENST00000615559 522 ntBASIC13.61□□□□□ -0.23
HMGB3O15347 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
HMGB3O15347 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC13.61□□□□□ -0.23
HMGB3O15347 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.61□□□□□ -0.23
HMGB3O15347 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC13.61□□□□□ -0.23
HMGB3O15347 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC13.61□□□□□ -0.23
HMGB3O15347 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
HMGB3O15347 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
HMGB3O15347 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC13.61□□□□□ -0.23
HMGB3O15347 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC13.6□□□□□ -0.23
HMGB3O15347 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC13.6□□□□□ -0.23
HMGB3O15347 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
HMGB3O15347 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 ACAP2-201ENST00000326793 7160 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
HMGB3O15347 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC13.6□□□□□ -0.23
HMGB3O15347 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
HMGB3O15347 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
HMGB3O15347 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC13.6□□□□□ -0.23
HMGB3O15347 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
HMGB3O15347 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 AC005104.2-201ENST00000427818 678 ntBASIC13.6□□□□□ -0.23
HMGB3O15347 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 TSPY17P-201ENST00000450329 467 ntBASIC13.6□□□□□ -0.23
HMGB3O15347 AC128676.1-201ENST00000454392 318 ntBASIC13.6□□□□□ -0.23
HMGB3O15347 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC13.6□□□□□ -0.23
HMGB3O15347 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
HMGB3O15347 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC13.6□□□□□ -0.23
HMGB3O15347 TBCB-214ENST00000629269 413 ntTSL 5 BASIC13.6□□□□□ -0.23
HMGB3O15347 NBEA-204ENST00000400445 11119 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
HMGB3O15347 MADD-203ENST00000349238 5873 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC13.6□□□□□ -0.23
HMGB3O15347 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC13.6□□□□□ -0.23
HMGB3O15347 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
HMGB3O15347 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
HMGB3O15347 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms