Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SMKR1H3BMG3 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
SMKR1H3BMG3 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
SMKR1H3BMG3 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC12.37□□□□□ -0.43
SMKR1H3BMG3 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
SMKR1H3BMG3 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
SMKR1H3BMG3 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
SMKR1H3BMG3 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SMKR1H3BMG3 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC12.37□□□□□ -0.43
SMKR1H3BMG3 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
SMKR1H3BMG3 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SMKR1H3BMG3 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
SMKR1H3BMG3 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
SMKR1H3BMG3 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 AMT-206ENST00000458307 1860 ntTSL 2 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 AP002490.2-201ENST00000524791 560 ntBASIC12.36□□□□□ -0.43
SMKR1H3BMG3 FITM1-202ENST00000559294 800 ntBASIC12.36□□□□□ -0.43
SMKR1H3BMG3 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
SMKR1H3BMG3 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 KRT18P48-201ENST00000434763 852 ntBASIC12.35□□□□□ -0.43
SMKR1H3BMG3 PON3-205ENST00000451904 1053 ntTSL 3 BASIC12.35□□□□□ -0.43
SMKR1H3BMG3 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms