Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HIF3AQ9Y2N7 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 SCARNA2-201ENST00000458748 420 ntBASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 MSRA-206ENST00000521209 814 ntTSL 3 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 PRR29-207ENST00000580752 458 ntTSL 3 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 AC004706.3-202ENST00000621574 984 ntBASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 AC006277.1-201ENST00000624348 1610 ntBASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 AC006538.1-201ENST00000567905 1585 ntBASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HIF3AQ9Y2N7 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 ARTN-206ENST00000472435 402 ntTSL 3 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 SKP2-204ENST00000508514 821 ntTSL 3 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 PRELID1P1-202ENST00000567272 903 ntBASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 RNF151-202ENST00000569210 853 ntTSL 2 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 MTDHP4-201ENST00000600287 670 ntBASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.23■□□□□ 0.03
HIF3AQ9Y2N7 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms