Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 EMBP1-201ENST00000458200 901 ntBASIC13.67□□□□□ -0.22
FOXA2Q9Y261 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 DUX4L17-201ENST00000557360 1267 ntBASIC13.67□□□□□ -0.22
FOXA2Q9Y261 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 AC026691.1-201ENST00000602502 2017 ntBASIC13.67□□□□□ -0.22
FOXA2Q9Y261 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC13.67□□□□□ -0.22
FOXA2Q9Y261 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 AC148477.5-201ENST00000625164 1645 ntBASIC13.66□□□□□ -0.22
FOXA2Q9Y261 LINC00895-201ENST00000629028 1637 ntBASIC13.66□□□□□ -0.22
FOXA2Q9Y261 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 HLA-J-202ENST00000469281 1241 ntBASIC13.66□□□□□ -0.22
FOXA2Q9Y261 S100A2-206ENST00000497140 697 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 MSRA-206ENST00000521209 814 ntTSL 3 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 AF238378.1-201ENST00000526806 358 ntBASIC13.66□□□□□ -0.22
FOXA2Q9Y261 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 COPE-211ENST00000600932 1144 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 AL121912.1-201ENST00000603683 238 ntBASIC13.66□□□□□ -0.22
FOXA2Q9Y261 AL022326.1-202ENST00000641533 845 ntBASIC13.66□□□□□ -0.22
FOXA2Q9Y261 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC13.66□□□□□ -0.22
FOXA2Q9Y261 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
FOXA2Q9Y261 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms