Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 RNA5SP415-201ENST00000517246 115 ntBASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 AC010654.1-201ENST00000615722 808 ntBASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
AP4E1Q9UPM8 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 SLC22A20-204ENST00000530038 1673 ntBASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 PMS2P1-201ENST00000431037 1228 ntBASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 AC009947.1-201ENST00000444350 727 ntBASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 MIR4492-201ENST00000581627 80 ntBASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 AC131009.4-201ENST00000624048 1740 ntBASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 AL353732.1-201ENST00000569618 1459 ntBASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
AP4E1Q9UPM8 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 PRSS29P-201ENST00000440800 595 ntBASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 FDX1P1-201ENST00000449115 551 ntBASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 AC079776.4-201ENST00000511039 504 ntBASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 AC005412.3-201ENST00000580309 715 ntBASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
AP4E1Q9UPM8 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms