Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 ZNF527-203ENST00000483919 1142 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 AC055876.2-201ENST00000531834 546 ntBASIC16.43■□□□□ 0.22
VPS13AQ96RL7 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 AL033527.5-201ENST00000641382 801 ntBASIC16.43■□□□□ 0.22
VPS13AQ96RL7 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
VPS13AQ96RL7 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 BTNL10-201ENST00000595971 695 ntBASIC16.42■□□□□ 0.22
VPS13AQ96RL7 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 AC093726.1-201ENST00000608064 963 ntBASIC16.42■□□□□ 0.22
VPS13AQ96RL7 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 AC007969.1-201ENST00000433675 447 ntBASIC16.42■□□□□ 0.22
VPS13AQ96RL7 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 RPS2P36-201ENST00000456516 831 ntBASIC16.42■□□□□ 0.22
VPS13AQ96RL7 AL512361.1-201ENST00000554200 418 ntBASIC16.42■□□□□ 0.22
VPS13AQ96RL7 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 AL353705.2-201ENST00000428243 662 ntBASIC16.42■□□□□ 0.22
VPS13AQ96RL7 AC007551.1-201ENST00000457394 519 ntBASIC16.42■□□□□ 0.22
VPS13AQ96RL7 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 AC025048.3-201ENST00000590609 569 ntBASIC16.42■□□□□ 0.22
VPS13AQ96RL7 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC16.42■□□□□ 0.22
VPS13AQ96RL7 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 RN7SL219P-201ENST00000582872 296 ntBASIC16.41■□□□□ 0.22
VPS13AQ96RL7 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.41■□□□□ 0.22
VPS13AQ96RL7 WFDC1-204ENST00000613603 549 ntBASIC16.41■□□□□ 0.22
VPS13AQ96RL7 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 LINC00895-201ENST00000629028 1637 ntBASIC16.41■□□□□ 0.22
VPS13AQ96RL7 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.41■□□□□ 0.22
VPS13AQ96RL7 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VPS13AQ96RL7 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms