Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 MIR662-201ENST00000384847 95 ntBASIC14.55□□□□□ -0.08
CMTM3Q96MX0 MIR718-201ENST00000390190 70 ntBASIC14.55□□□□□ -0.08
CMTM3Q96MX0 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 GCSHP5-201ENST00000443090 522 ntBASIC14.55□□□□□ -0.08
CMTM3Q96MX0 ZNF444P1-201ENST00000559497 298 ntBASIC14.55□□□□□ -0.08
CMTM3Q96MX0 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 KRT8P49-201ENST00000604166 1432 ntBASIC14.55□□□□□ -0.08
CMTM3Q96MX0 FOS-208ENST00000555686 1496 ntTSL 2 BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CMTM3Q96MX0 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 MDFI-202ENST00000373050 809 ntTSL 2 BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 AC141257.4-201ENST00000634557 245 ntBASIC14.54□□□□□ -0.08
CMTM3Q96MX0 AC136944.6-201ENST00000634818 245 ntBASIC14.54□□□□□ -0.08
CMTM3Q96MX0 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
CMTM3Q96MX0 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 TSPY26P-202ENST00000565928 3884 ntBASIC14.53□□□□□ -0.08
CMTM3Q96MX0 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 AC097637.2-201ENST00000624096 1997 ntBASIC14.53□□□□□ -0.08
CMTM3Q96MX0 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 DHDH-203ENST00000522614 776 ntTSL 5 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 AC005332.3-201ENST00000589904 676 ntBASIC14.53□□□□□ -0.08
CMTM3Q96MX0 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CMTM3Q96MX0 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms