Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
LRCH3Q96II8 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.16■□□□□ 0.5
LRCH3Q96II8 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 MIR663B-201ENST00000408361 115 ntBASIC18.16■□□□□ 0.5
LRCH3Q96II8 RPL37AP1-201ENST00000412502 279 ntBASIC18.16■□□□□ 0.5
LRCH3Q96II8 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.16■□□□□ 0.5
LRCH3Q96II8 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.16■□□□□ 0.5
LRCH3Q96II8 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 AC108725.1-201ENST00000495472 409 ntBASIC18.16■□□□□ 0.5
LRCH3Q96II8 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 AC009446.1-201ENST00000519840 808 ntTSL 2 BASIC18.16■□□□□ 0.5
LRCH3Q96II8 NEU3-203ENST00000529024 581 ntTSL 3 BASIC18.16■□□□□ 0.5
LRCH3Q96II8 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
LRCH3Q96II8 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC18.16■□□□□ 0.5
LRCH3Q96II8 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC18.16■□□□□ 0.5
LRCH3Q96II8 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.16■□□□□ 0.5
LRCH3Q96II8 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC18.16■□□□□ 0.5
LRCH3Q96II8 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.16■□□□□ 0.5
LRCH3Q96II8 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
LRCH3Q96II8 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 CTBP2P3-201ENST00000585629 1255 ntBASIC18.15■□□□□ 0.5
LRCH3Q96II8 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC18.15■□□□□ 0.5
LRCH3Q96II8 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
LRCH3Q96II8 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
LRCH3Q96II8 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
LRCH3Q96II8 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.5
LRCH3Q96II8 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRCH3Q96II8 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LRCH3Q96II8 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LRCH3Q96II8 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRCH3Q96II8 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRCH3Q96II8 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRCH3Q96II8 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 SERPINA7P1-201ENST00000443077 631 ntBASIC18.14■□□□□ 0.49
LRCH3Q96II8 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 AL355994.2-201ENST00000447882 704 ntBASIC18.14■□□□□ 0.49
LRCH3Q96II8 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
LRCH3Q96II8 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRCH3Q96II8 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRCH3Q96II8 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRCH3Q96II8 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRCH3Q96II8 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
LRCH3Q96II8 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.14■□□□□ 0.49
LRCH3Q96II8 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms