Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC148477.8-201ENST00000624298 468 ntBASIC16.24■□□□□ 0.19
VMP1Q96GC9 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 LINC00304-203ENST00000565008 1864 ntBASIC16.24■□□□□ 0.19
VMP1Q96GC9 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VMP1Q96GC9 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
VMP1Q96GC9 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 HLA-J-201ENST00000462773 1622 ntBASIC16.23■□□□□ 0.19
VMP1Q96GC9 HLA-A-201ENST00000376802 1334 ntBASIC16.23■□□□□ 0.19
VMP1Q96GC9 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 AC079776.4-201ENST00000511039 504 ntBASIC16.23■□□□□ 0.19
VMP1Q96GC9 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 LINC02199-201ENST00000506655 2702 ntBASIC16.23■□□□□ 0.19
VMP1Q96GC9 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.23■□□□□ 0.19
VMP1Q96GC9 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VMP1Q96GC9 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 LAGE3P1-201ENST00000425356 484 ntBASIC16.22■□□□□ 0.19
VMP1Q96GC9 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 FAM215A-202ENST00000632077 792 ntBASIC16.22■□□□□ 0.19
VMP1Q96GC9 AC107918.4-202ENST00000641623 219 ntBASIC16.22■□□□□ 0.19
VMP1Q96GC9 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 AC148477.5-201ENST00000625164 1645 ntBASIC16.22■□□□□ 0.19
VMP1Q96GC9 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VMP1Q96GC9 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.22■□□□□ 0.19
VMP1Q96GC9 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
VMP1Q96GC9 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.21■□□□□ 0.19
VMP1Q96GC9 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC16.21■□□□□ 0.19
VMP1Q96GC9 GCK-209ENST00000616242 2260 ntTSL 5 BASIC16.21■□□□□ 0.19
VMP1Q96GC9 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VMP1Q96GC9 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VMP1Q96GC9 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
VMP1Q96GC9 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VMP1Q96GC9 AC004817.3-201ENST00000602957 2129 ntBASIC16.21■□□□□ 0.19
VMP1Q96GC9 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.21■□□□□ 0.19
VMP1Q96GC9 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.21■□□□□ 0.19
VMP1Q96GC9 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
VMP1Q96GC9 HNRNPDP1-201ENST00000439535 754 ntBASIC16.21■□□□□ 0.19
VMP1Q96GC9 RNA5SP419-201ENST00000515908 135 ntBASIC16.21■□□□□ 0.19
VMP1Q96GC9 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.21■□□□□ 0.19
VMP1Q96GC9 AL139327.4-201ENST00000612362 153 ntBASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms