Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CHMP4CQ96CF2 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CHMP4CQ96CF2 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CHMP4CQ96CF2 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.13■□□□□ 0.81
CHMP4CQ96CF2 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CHMP4CQ96CF2 AC105020.1-201ENST00000435356 2205 ntBASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 BEX3-201ENST00000361298 921 ntTSL 2 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 IGHV3-65-201ENST00000523210 341 ntBASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 AC008667.4-201ENST00000607370 168 ntBASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 GPALPP1-207ENST00000611650 899 ntBASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 FRMD8P1-201ENST00000440433 1524 ntBASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 AC092053.1-201ENST00000605787 1936 ntBASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CHMP4CQ96CF2 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 MAL2-202ENST00000531508 892 ntTSL 3 BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 AC006538.3-201ENST00000612495 578 ntBASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 AL513190.1-201ENST00000621254 727 ntBASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 AC055717.3-201ENST00000622967 595 ntBASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 PGM5P2-202ENST00000637225 1043 ntBASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CHMP4CQ96CF2 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 VN2R19P-201ENST00000442399 1052 ntBASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CHMP4CQ96CF2 TCAP-202ENST00000578283 583 ntTSL 5 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms