Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
HMGB4Q8WW32 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 AL138918.1-201ENST00000568306 659 ntBASIC16.86■□□□□ 0.29
HMGB4Q8WW32 MIR3909-201ENST00000579518 119 ntBASIC16.86■□□□□ 0.29
HMGB4Q8WW32 MPDU1-223ENST00000582151 728 ntBASIC16.86■□□□□ 0.29
HMGB4Q8WW32 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 AC008761.3-201ENST00000624803 892 ntBASIC16.86■□□□□ 0.29
HMGB4Q8WW32 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
HMGB4Q8WW32 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 COPE-202ENST00000349893 948 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 MIR346-201ENST00000362234 95 ntBASIC16.85■□□□□ 0.29
HMGB4Q8WW32 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 FAM207CP-201ENST00000443486 507 ntBASIC16.85■□□□□ 0.29
HMGB4Q8WW32 AC012645.4-201ENST00000610691 1061 ntBASIC16.85■□□□□ 0.29
HMGB4Q8WW32 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
HMGB4Q8WW32 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 GSAP-205ENST00000430584 600 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 HFE2-206ENST00000634927 506 ntTSL 4 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
HMGB4Q8WW32 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms